Cluster: Rep_3001_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- CGC Family ID: CGCFAM_01246
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3001_c_53 | Rep_3001_c_53_1 | 1 | 1485 | + | 3.A.9.1.2 |
| pfam | Rep_3001_c_53 | Rep_3001_c_53_2 | 1544 | 2881 | - | MatE | MatE |
| TC | Rep_3001_c_53 | Rep_3001_c_53_3 | 3152 | 4507 | + | 2.A.45.2.2 |
| TC | Rep_3001_c_53 | Rep_3001_c_53_4 | 4523 | 5119 | + | 2.A.115.2.14 |
| CAZyme | Rep_3001_c_53 | Rep_3001_c_53_5 | 5229 | 9218 | + | GH77 | GT35 |
Gene ID: Rep_3001_c_53_1
Type: TC
Location: 1 - 1485 (+)
Type: TC
Location: 1 - 1485 (+)
Gene ID: Rep_3001_c_53_2
Type: pfam
Location: 1544 - 2881 (-)
Type: pfam
Location: 1544 - 2881 (-)
Gene ID: Rep_3001_c_53_3
Type: TC
Location: 3152 - 4507 (+)
Type: TC
Location: 3152 - 4507 (+)
Gene ID: Rep_3001_c_53_4
Type: TC
Location: 4523 - 5119 (+)
Type: TC
Location: 4523 - 5119 (+)
Gene ID: Rep_3001_c_53_5
Type: CAZyme
Location: 5229 - 9218 (+)
Type: CAZyme
Location: 5229 - 9218 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.