Cluster: Rep_3001_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- CGC Family ID: CGCFAM_09840
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3001_c_37 | Rep_3001_c_37_5 | 4918 | 6225 | - | GH29 |
| pfam | Rep_3001_c_37 | Rep_3001_c_37_6 | 6271 | 6732 | - | SmpB |
| TC | Rep_3001_c_37 | Rep_3001_c_37_7 | 6795 | 8210 | - | 2.A.66.1.32 |
| TF | Rep_3001_c_37 | Rep_3001_c_37_8 | 8507 | 9007 | + | MarR |
| TC | Rep_3001_c_37 | Rep_3001_c_37_9 | 9004 | 10740 | + | 3.A.1.135.7 |
| TC | Rep_3001_c_37 | Rep_3001_c_37_10 | 10737 | 12557 | + | 3.A.1.135.5 |
Gene ID: Rep_3001_c_37_5
Type: CAZyme
Location: 4918 - 6225 (-)
Type: CAZyme
Location: 4918 - 6225 (-)
Gene ID: Rep_3001_c_37_6
Type: pfam
Location: 6271 - 6732 (-)
Type: pfam
Location: 6271 - 6732 (-)
Gene ID: Rep_3001_c_37_7
Type: TC
Location: 6795 - 8210 (-)
Type: TC
Location: 6795 - 8210 (-)
Gene ID: Rep_3001_c_37_8
Type: TF
Location: 8507 - 9007 (+)
Type: TF
Location: 8507 - 9007 (+)
Gene ID: Rep_3001_c_37_9
Type: TC
Location: 9004 - 10740 (+)
Type: TC
Location: 9004 - 10740 (+)
Gene ID: Rep_3001_c_37_10
Type: TC
Location: 10737 - 12557 (+)
Type: TC
Location: 10737 - 12557 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3001_c_37_7 | vegan > omnivore | 1.03124 | 0.02448 |