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Cluster: Rep_3001_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3001_c_30 Rep_3001_c_30_10 7965 10538 + GT51
NULL(UNKNOWN) Rep_3001_c_30 Rep_3001_c_30_11 10597 12384 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3001_c_30 Rep_3001_c_30_12 12485 13465 - 3.D.6.1.2
TC Rep_3001_c_30 Rep_3001_c_30_13 13479 14057 - 3.D.6.1.2
TC Rep_3001_c_30 Rep_3001_c_30_14 14058 14696 - 3.D.6.1.2
pfam Rep_3001_c_30 Rep_3001_c_30_15 14714 15259 - FMN_bind
TC Rep_3001_c_30 Rep_3001_c_30_16 15252 16166 - 3.D.6.1.2
TC Rep_3001_c_30 Rep_3001_c_30_17 16185 17519 - 3.D.6.1.2
Gene ID: Rep_3001_c_30_10
Type: CAZyme
Location: 7965 - 10538 (+)
Gene ID: Rep_3001_c_30_11
Type:
Location: 10597 - 12384 (-)
Gene ID: Rep_3001_c_30_12
Type: TC
Location: 12485 - 13465 (-)
Gene ID: Rep_3001_c_30_13
Type: TC
Location: 13479 - 14057 (-)
Gene ID: Rep_3001_c_30_14
Type: TC
Location: 14058 - 14696 (-)
Gene ID: Rep_3001_c_30_15
Type: pfam
Location: 14714 - 15259 (-)
Gene ID: Rep_3001_c_30_16
Type: TC
Location: 15252 - 16166 (-)
Gene ID: Rep_3001_c_30_17
Type: TC
Location: 16185 - 17519 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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