Cluster: Rep_3001_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3001_c_29 | Rep_3001_c_29_1 | 153 | 1523 | - | 2.A.66.1.32 |
| CAZyme | Rep_3001_c_29 | Rep_3001_c_29_2 | 1633 | 2700 | - | GH179 |
| CAZyme | Rep_3001_c_29 | Rep_3001_c_29_3 | 2740 | 4623 | - | GH127 |
| TC | Rep_3001_c_29 | Rep_3001_c_29_4 | 4806 | 5624 | - | 3.A.1.17.3 |
| TC | Rep_3001_c_29 | Rep_3001_c_29_5 | 5614 | 6381 | - | 3.A.1.16.2 |
| TC | Rep_3001_c_29 | Rep_3001_c_29_6 | 6914 | 8650 | - | 3.A.1.106.2 |
Gene ID: Rep_3001_c_29_1
Type: TC
Location: 153 - 1523 (-)
Type: TC
Location: 153 - 1523 (-)
Gene ID: Rep_3001_c_29_2
Type: CAZyme
Location: 1633 - 2700 (-)
Type: CAZyme
Location: 1633 - 2700 (-)
Gene ID: Rep_3001_c_29_3
Type: CAZyme
Location: 2740 - 4623 (-)
Type: CAZyme
Location: 2740 - 4623 (-)
Gene ID: Rep_3001_c_29_4
Type: TC
Location: 4806 - 5624 (-)
Type: TC
Location: 4806 - 5624 (-)
Gene ID: Rep_3001_c_29_5
Type: TC
Location: 5614 - 6381 (-)
Type: TC
Location: 5614 - 6381 (-)
Gene ID: Rep_3001_c_29_6
Type: TC
Location: 6914 - 8650 (-)
Type: TC
Location: 6914 - 8650 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.