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Cluster: Rep_3001_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3001_c_23 Rep_3001_c_23_6 5758 7395 + GH5
NULL(UNKNOWN) Rep_3001_c_23 Rep_3001_c_23_7 7408 8442 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3001_c_23 Rep_3001_c_23_8 8760 11390 + 8.A.7.1.5
pfam Rep_3001_c_23 Rep_3001_c_23_9 11632 12588 + PBP_like | PBP_like_2 | SBP_bac_11
TC Rep_3001_c_23 Rep_3001_c_23_10 12717 13634 + 3.A.1.7.5
TC Rep_3001_c_23 Rep_3001_c_23_11 13639 14475 + 3.A.1.7.5
TC Rep_3001_c_23 Rep_3001_c_23_12 14478 15236 + 3.A.1.7.5
pfam Rep_3001_c_23 Rep_3001_c_23_13 15280 15951 + PhoU | PhoU
TF Rep_3001_c_23 Rep_3001_c_23_14 16137 16826 + Trans_reg_C
TC Rep_3001_c_23 Rep_3001_c_23_15 17591 19336 + 2.A.21.9.2
Gene ID: Rep_3001_c_23_6
Type: CAZyme
Location: 5758 - 7395 (+)
Gene ID: Rep_3001_c_23_7
Type:
Location: 7408 - 8442 (+)
Gene ID: Rep_3001_c_23_8
Type: TC
Location: 8760 - 11390 (+)
Gene ID: Rep_3001_c_23_9
Type: pfam
Location: 11632 - 12588 (+)
Gene ID: Rep_3001_c_23_10
Type: TC
Location: 12717 - 13634 (+)
Gene ID: Rep_3001_c_23_11
Type: TC
Location: 13639 - 14475 (+)
Gene ID: Rep_3001_c_23_12
Type: TC
Location: 14478 - 15236 (+)
Gene ID: Rep_3001_c_23_13
Type: pfam
Location: 15280 - 15951 (+)
Gene ID: Rep_3001_c_23_14
Type: TF
Location: 16137 - 16826 (+)
Gene ID: Rep_3001_c_23_15
Type: TC
Location: 17591 - 19336 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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