Cluster: Rep_3001_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- CGC Family ID: CGCFAM_06284
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3001_c_18 | Rep_3001_c_18_7 | 5330 | 5869 | - | 4.F.1.1.7 |
| NULL(UNKNOWN) | Rep_3001_c_18 | Rep_3001_c_18_8 | 6291 | 6638 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3001_c_18 | Rep_3001_c_18_9 | 6781 | 7389 | + | LUD_dom |
| CAZyme | Rep_3001_c_18 | Rep_3001_c_18_10 | 7406 | 9379 | + | GH78 |
Gene ID: Rep_3001_c_18_7
Type: TC
Location: 5330 - 5869 (-)
Type: TC
Location: 5330 - 5869 (-)
Gene ID: Rep_3001_c_18_8
Type:
Location: 6291 - 6638 (-)
Type:
Location: 6291 - 6638 (-)
Gene ID: Rep_3001_c_18_9
Type: pfam
Location: 6781 - 7389 (+)
Type: pfam
Location: 6781 - 7389 (+)
Gene ID: Rep_3001_c_18_10
Type: CAZyme
Location: 7406 - 9379 (+)
Type: CAZyme
Location: 7406 - 9379 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.