Cluster: Rep_3001_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3001_c_16 | Rep_3001_c_16_37 | 42076 | 43371 | + | GH27 |
| pfam | Rep_3001_c_16 | Rep_3001_c_16_38 | 43390 | 43608 | + | DUF6487 |
| CAZyme | Rep_3001_c_16 | Rep_3001_c_16_39 | 43650 | 44714 | + | GH172 |
| TF | Rep_3001_c_16 | Rep_3001_c_16_40 | 45123 | 45692 | + | HTH_3 |
| TC | Rep_3001_c_16 | Rep_3001_c_16_41 | 45748 | 47448 | + | 4.C.1.1.4 |
Gene ID: Rep_3001_c_16_37
Type: CAZyme
Location: 42076 - 43371 (+)
Type: CAZyme
Location: 42076 - 43371 (+)
Gene ID: Rep_3001_c_16_38
Type: pfam
Location: 43390 - 43608 (+)
Type: pfam
Location: 43390 - 43608 (+)
Gene ID: Rep_3001_c_16_39
Type: CAZyme
Location: 43650 - 44714 (+)
Type: CAZyme
Location: 43650 - 44714 (+)
Gene ID: Rep_3001_c_16_40
Type: TF
Location: 45123 - 45692 (+)
Type: TF
Location: 45123 - 45692 (+)
Gene ID: Rep_3001_c_16_41
Type: TC
Location: 45748 - 47448 (+)
Type: TC
Location: 45748 - 47448 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.