Cluster: Rep_3001_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3001_c_16 | Rep_3001_c_16_5 | 2747 | 4654 | - | 3.A.7.7.1 |
| CAZyme | Rep_3001_c_16 | Rep_3001_c_16_6 | 4800 | 7913 | + | GH2 |
| pfam | Rep_3001_c_16 | Rep_3001_c_16_7 | 8003 | 8857 | - | SAICAR_synt |
| TC | Rep_3001_c_16 | Rep_3001_c_16_8 | 8965 | 9942 | - | 3.A.1.141.1 |
Gene ID: Rep_3001_c_16_5
Type: TC
Location: 2747 - 4654 (-)
Type: TC
Location: 2747 - 4654 (-)
Gene ID: Rep_3001_c_16_6
Type: CAZyme
Location: 4800 - 7913 (+)
Type: CAZyme
Location: 4800 - 7913 (+)
Gene ID: Rep_3001_c_16_7
Type: pfam
Location: 8003 - 8857 (-)
Type: pfam
Location: 8003 - 8857 (-)
Gene ID: Rep_3001_c_16_8
Type: TC
Location: 8965 - 9942 (-)
Type: TC
Location: 8965 - 9942 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.