Cluster: Rep_3001_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3001_c_15 | Rep_3001_c_15_46 | 49330 | 50655 | + | GH13 |
| STP | Rep_3001_c_15 | Rep_3001_c_15_47 | 50695 | 51246 | + | TetR_N |
| CAZyme | Rep_3001_c_15 | Rep_3001_c_15_48 | 51304 | 52137 | - | GT8 |
| pfam | Rep_3001_c_15 | Rep_3001_c_15_49 | 52148 | 52690 | - | DUF308 | DUF308 | DUF308 |
| TF | Rep_3001_c_15 | Rep_3001_c_15_50 | 52827 | 53588 | - | HTH_AraC | HTH_AraC |
| TC | Rep_3001_c_15 | Rep_3001_c_15_51 | 54163 | 55125 | + | 3.A.1.1.29 |
| TC | Rep_3001_c_15 | Rep_3001_c_15_52 | 55143 | 56030 | + | 3.A.1.1.29 |
Gene ID: Rep_3001_c_15_46
Type: CAZyme
Location: 49330 - 50655 (+)
Type: CAZyme
Location: 49330 - 50655 (+)
Gene ID: Rep_3001_c_15_47
Type: STP
Location: 50695 - 51246 (+)
Type: STP
Location: 50695 - 51246 (+)
Gene ID: Rep_3001_c_15_48
Type: CAZyme
Location: 51304 - 52137 (-)
Type: CAZyme
Location: 51304 - 52137 (-)
Gene ID: Rep_3001_c_15_49
Type: pfam
Location: 52148 - 52690 (-)
Type: pfam
Location: 52148 - 52690 (-)
Gene ID: Rep_3001_c_15_50
Type: TF
Location: 52827 - 53588 (-)
Type: TF
Location: 52827 - 53588 (-)
Gene ID: Rep_3001_c_15_51
Type: TC
Location: 54163 - 55125 (+)
Type: TC
Location: 54163 - 55125 (+)
Gene ID: Rep_3001_c_15_52
Type: TC
Location: 55143 - 56030 (+)
Type: TC
Location: 55143 - 56030 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.