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Cluster: Rep_3001_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3001_c_11 Rep_3001_c_11_45 43251 45695 + GT35
CAZyme Rep_3001_c_11 Rep_3001_c_11_46 45701 47590 + GH13_39
pfam Rep_3001_c_11 Rep_3001_c_11_47 47666 47872 + DUF1858
NULL(UNKNOWN) Rep_3001_c_11 Rep_3001_c_11_48 48178 48633 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3001_c_11 Rep_3001_c_11_49 48704 50203 - GT5
pfam Rep_3001_c_11 Rep_3001_c_11_50 50317 51441 - NTP_transferase | Hexapep_GlmU
pfam Rep_3001_c_11 Rep_3001_c_11_51 51438 52646 - NTP_transferase | Hexapep_GlmU
CAZyme Rep_3001_c_11 Rep_3001_c_11_52 52697 54598 - CBM48 | GH13_9
TC Rep_3001_c_11 Rep_3001_c_11_53 54859 55872 + 8.A.5.1.6
NULL(UNKNOWN) Rep_3001_c_11 Rep_3001_c_11_54 55934 57733 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3001_c_11 Rep_3001_c_11_55 58308 59414 - GT28
Gene ID: Rep_3001_c_11_45
Type: CAZyme
Location: 43251 - 45695 (+)
Gene ID: Rep_3001_c_11_46
Type: CAZyme
Location: 45701 - 47590 (+)
Gene ID: Rep_3001_c_11_47
Type: pfam
Location: 47666 - 47872 (+)
Gene ID: Rep_3001_c_11_48
Type:
Location: 48178 - 48633 (-)
Gene ID: Rep_3001_c_11_49
Type: CAZyme
Location: 48704 - 50203 (-)
Gene ID: Rep_3001_c_11_50
Type: pfam
Location: 50317 - 51441 (-)
Gene ID: Rep_3001_c_11_51
Type: pfam
Location: 51438 - 52646 (-)
Gene ID: Rep_3001_c_11_52
Type: CAZyme
Location: 52697 - 54598 (-)
Gene ID: Rep_3001_c_11_53
Type: TC
Location: 54859 - 55872 (+)
Gene ID: Rep_3001_c_11_54
Type:
Location: 55934 - 57733 (+)
Gene ID: Rep_3001_c_11_55
Type: CAZyme
Location: 58308 - 59414 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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