Cluster: Rep_3001_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3001_c_10 | Rep_3001_c_10_65 | 67058 | 69082 | + | GH31_4 |
| TC | Rep_3001_c_10 | Rep_3001_c_10_66 | 69145 | 71847 | - | 3.A.3.5.15 |
| STP | Rep_3001_c_10 | Rep_3001_c_10_67 | 72201 | 72419 | + | HMA |
| TC | Rep_3001_c_10 | Rep_3001_c_10_68 | 72534 | 74420 | + | 3.A.3.6.10 |
Gene ID: Rep_3001_c_10_65
Type: CAZyme
Location: 67058 - 69082 (+)
Type: CAZyme
Location: 67058 - 69082 (+)
Gene ID: Rep_3001_c_10_66
Type: TC
Location: 69145 - 71847 (-)
Type: TC
Location: 69145 - 71847 (-)
Gene ID: Rep_3001_c_10_67
Type: STP
Location: 72201 - 72419 (+)
Type: STP
Location: 72201 - 72419 (+)
Gene ID: Rep_3001_c_10_68
Type: TC
Location: 72534 - 74420 (+)
Type: TC
Location: 72534 - 74420 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3001_c_10_67 | vegan > omnivore | 1.05498 | 0.00181 |