Cluster: Rep_3001_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- CGC Family ID: CGCFAM_01204
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3001_c_0 | Rep_3001_c_0_34 | 35116 | 36528 | + | 3.A.7.19.1 |
| STP | Rep_3001_c_0 | Rep_3001_c_0_35 | 36653 | 38014 | - | HATPase_c | HisKA |
| TF | Rep_3001_c_0 | Rep_3001_c_0_36 | 38011 | 38706 | - | Trans_reg_C |
| TC | Rep_3001_c_0 | Rep_3001_c_0_37 | 38866 | 39789 | + | 3.A.1.131.1 |
| pfam | Rep_3001_c_0 | Rep_3001_c_0_38 | 39782 | 40585 | + | ABC2_membrane_4 |
| pfam | Rep_3001_c_0 | Rep_3001_c_0_39 | 40587 | 41357 | + | ABC2_membrane_2 | ABC2_membrane_4 |
| CAZyme | Rep_3001_c_0 | Rep_3001_c_0_40 | 41770 | 42471 | + | GT51 |
Gene ID: Rep_3001_c_0_34
Type: TC
Location: 35116 - 36528 (+)
Type: TC
Location: 35116 - 36528 (+)
Gene ID: Rep_3001_c_0_35
Type: STP
Location: 36653 - 38014 (-)
Type: STP
Location: 36653 - 38014 (-)
Gene ID: Rep_3001_c_0_36
Type: TF
Location: 38011 - 38706 (-)
Type: TF
Location: 38011 - 38706 (-)
Gene ID: Rep_3001_c_0_37
Type: TC
Location: 38866 - 39789 (+)
Type: TC
Location: 38866 - 39789 (+)
Gene ID: Rep_3001_c_0_38
Type: pfam
Location: 39782 - 40585 (+)
Type: pfam
Location: 39782 - 40585 (+)
Gene ID: Rep_3001_c_0_39
Type: pfam
Location: 40587 - 41357 (+)
Type: pfam
Location: 40587 - 41357 (+)
Gene ID: Rep_3001_c_0_40
Type: CAZyme
Location: 41770 - 42471 (+)
Type: CAZyme
Location: 41770 - 42471 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.