Cluster: Rep_2926_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2926
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2926_c_17 | Rep_2926_c_17_40 | 44503 | 45663 | - | CE9 |
| NULL(UNKNOWN) | Rep_2926_c_17 | Rep_2926_c_17_41 | 45673 | 46494 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2926_c_17 | Rep_2926_c_17_42 | 46625 | 47701 | - | 3.A.1.17.4 |
| TC | Rep_2926_c_17 | Rep_2926_c_17_43 | 47828 | 48619 | - | 3.A.1.16.2 |
| TC | Rep_2926_c_17 | Rep_2926_c_17_44 | 48595 | 49377 | - | 3.A.1.17.1 |
Gene ID: Rep_2926_c_17_40
Type: CAZyme
Location: 44503 - 45663 (-)
Type: CAZyme
Location: 44503 - 45663 (-)
Gene ID: Rep_2926_c_17_41
Type:
Location: 45673 - 46494 (-)
Type:
Location: 45673 - 46494 (-)
Gene ID: Rep_2926_c_17_42
Type: TC
Location: 46625 - 47701 (-)
Type: TC
Location: 46625 - 47701 (-)
Gene ID: Rep_2926_c_17_43
Type: TC
Location: 47828 - 48619 (-)
Type: TC
Location: 47828 - 48619 (-)
Gene ID: Rep_2926_c_17_44
Type: TC
Location: 48595 - 49377 (-)
Type: TC
Location: 48595 - 49377 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.