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Cluster: Rep_254_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_254_c_310 Rep_254_c_310_9 7049 9580 - GH115
NULL(UNKNOWN) Rep_254_c_310 Rep_254_c_310_10 9584 9877 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_254_c_310 Rep_254_c_310_11 9961 12963 - GH98
CAZyme Rep_254_c_310 Rep_254_c_310_12 13001 14677 - GH10
pfam Rep_254_c_310 Rep_254_c_310_13 14698 15690 - BT_3987-like_N | DUF5627
pfam Rep_254_c_310 Rep_254_c_310_14 15715 17487 - SusD_RagB | SusD-like_3
TC Rep_254_c_310 Rep_254_c_310_15 17516 20332 - 1.B.14.6.1
pfam Rep_254_c_310 Rep_254_c_310_16 20403 22280 - SusD_RagB | SusD-like_3
TC Rep_254_c_310 Rep_254_c_310_17 22331 25423 - 1.B.14.6.1
TF Rep_254_c_310 Rep_254_c_310_18 25691 29557 - HTH_AraC | HTH_AraC
CAZyme Rep_254_c_310 Rep_254_c_310_19 29738 32239 + GH115
CAZyme Rep_254_c_310 Rep_254_c_310_20 32265 33365 - CE1
CAZyme Rep_254_c_310 Rep_254_c_310_21 33601 35544 + GH51_2
CAZyme Rep_254_c_310 Rep_254_c_310_22 35689 38145 + GH95
peptidase Rep_254_c_310 Rep_254_c_310_23 38288 39685 - S09.UPW
CAZyme Rep_254_c_310 Rep_254_c_310_24 40022 42499 + GH9
CAZyme Rep_254_c_310 Rep_254_c_310_25 42579 43739 - GH43_2
pfam Rep_254_c_310 Rep_254_c_310_26 43954 45759 - SusD_RagB | SusD-like_3
TC Rep_254_c_310 Rep_254_c_310_27 45780 48905 - 1.B.14.6.1
TF Rep_254_c_310 Rep_254_c_310_28 49111 53085 + HTH_AraC | HTH_AraC
CAZyme Rep_254_c_310 Rep_254_c_310_29 53256 55856 + GH3
Gene ID: Rep_254_c_310_9
Type: CAZyme
Location: 7049 - 9580 (-)
Gene ID: Rep_254_c_310_10
Type:
Location: 9584 - 9877 (-)
Gene ID: Rep_254_c_310_11
Type: CAZyme
Location: 9961 - 12963 (-)
Gene ID: Rep_254_c_310_12
Type: CAZyme
Location: 13001 - 14677 (-)
Gene ID: Rep_254_c_310_13
Type: pfam
Location: 14698 - 15690 (-)
Gene ID: Rep_254_c_310_14
Type: pfam
Location: 15715 - 17487 (-)
Gene ID: Rep_254_c_310_15
Type: TC
Location: 17516 - 20332 (-)
Gene ID: Rep_254_c_310_16
Type: pfam
Location: 20403 - 22280 (-)
Gene ID: Rep_254_c_310_17
Type: TC
Location: 22331 - 25423 (-)
Gene ID: Rep_254_c_310_18
Type: TF
Location: 25691 - 29557 (-)
Gene ID: Rep_254_c_310_19
Type: CAZyme
Location: 29738 - 32239 (+)
Gene ID: Rep_254_c_310_20
Type: CAZyme
Location: 32265 - 33365 (-)
Gene ID: Rep_254_c_310_21
Type: CAZyme
Location: 33601 - 35544 (+)
Gene ID: Rep_254_c_310_22
Type: CAZyme
Location: 35689 - 38145 (+)
Gene ID: Rep_254_c_310_23
Type: peptidase
Location: 38288 - 39685 (-)
Gene ID: Rep_254_c_310_24
Type: CAZyme
Location: 40022 - 42499 (+)
Gene ID: Rep_254_c_310_25
Type: CAZyme
Location: 42579 - 43739 (-)
Gene ID: Rep_254_c_310_26
Type: pfam
Location: 43954 - 45759 (-)
Gene ID: Rep_254_c_310_27
Type: TC
Location: 45780 - 48905 (-)
Gene ID: Rep_254_c_310_28
Type: TF
Location: 49111 - 53085 (+)
Gene ID: Rep_254_c_310_29
Type: CAZyme
Location: 53256 - 55856 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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