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Cluster: Rep_254_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_254_c_156 Rep_254_c_156_3 1092 2576 + 2.A.1.1.3
pfam Rep_254_c_156 Rep_254_c_156_4 2621 4117 + FGGY_N | FGGY_C
pfam Rep_254_c_156 Rep_254_c_156_5 4142 5626 + Fucose_iso_C
CAZyme Rep_254_c_156 Rep_254_c_156_6 5781 7760 - GH28
pfam Rep_254_c_156 Rep_254_c_156_7 7795 9408 - DUF5123
pfam Rep_254_c_156 Rep_254_c_156_8 9420 11471 - SusD_RagB | SusD-like_3
TC Rep_254_c_156 Rep_254_c_156_9 11526 14768 - 1.B.14.6.1
CAZyme Rep_254_c_156 Rep_254_c_156_10 14901 16352 - GH28
CAZyme Rep_254_c_156 Rep_254_c_156_11 16385 18196 - CE8
CAZyme Rep_254_c_156 Rep_254_c_156_12 18200 20782 - GH105 | GH28
Gene ID: Rep_254_c_156_3
Type: TC
Location: 1092 - 2576 (+)
Gene ID: Rep_254_c_156_4
Type: pfam
Location: 2621 - 4117 (+)
Gene ID: Rep_254_c_156_5
Type: pfam
Location: 4142 - 5626 (+)
Gene ID: Rep_254_c_156_6
Type: CAZyme
Location: 5781 - 7760 (-)
Gene ID: Rep_254_c_156_7
Type: pfam
Location: 7795 - 9408 (-)
Gene ID: Rep_254_c_156_8
Type: pfam
Location: 9420 - 11471 (-)
Gene ID: Rep_254_c_156_9
Type: TC
Location: 11526 - 14768 (-)
Gene ID: Rep_254_c_156_10
Type: CAZyme
Location: 14901 - 16352 (-)
Gene ID: Rep_254_c_156_11
Type: CAZyme
Location: 16385 - 18196 (-)
Gene ID: Rep_254_c_156_12
Type: CAZyme
Location: 18200 - 20782 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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