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Cluster: Rep_254_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_254_c_144 Rep_254_c_144_4 2478 4040 - 1.B.14.6.4
NULL(UNKNOWN) Rep_254_c_144 Rep_254_c_144_5 4149 4835 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_254_c_144 Rep_254_c_144_6 5359 9366 - HTH_AraC
TC Rep_254_c_144 Rep_254_c_144_7 9576 12641 + 1.B.14.6.1
sulfatase Rep_254_c_144 Rep_254_c_144_8 12662 14212 + S1_27
NULL(UNKNOWN) Rep_254_c_144 Rep_254_c_144_9 14252 15169 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_254_c_144 Rep_254_c_144_10 15183 16379 + CE1
CAZyme Rep_254_c_144 Rep_254_c_144_11 16398 18758 + GH3
Gene ID: Rep_254_c_144_4
Type: TC
Location: 2478 - 4040 (-)
Gene ID: Rep_254_c_144_5
Type:
Location: 4149 - 4835 (-)
Gene ID: Rep_254_c_144_6
Type: TF
Location: 5359 - 9366 (-)
Gene ID: Rep_254_c_144_7
Type: TC
Location: 9576 - 12641 (+)
Gene ID: Rep_254_c_144_8
Type: sulfatase
Location: 12662 - 14212 (+)
Gene ID: Rep_254_c_144_9
Type:
Location: 14252 - 15169 (+)
Gene ID: Rep_254_c_144_10
Type: CAZyme
Location: 15183 - 16379 (+)
Gene ID: Rep_254_c_144_11
Type: CAZyme
Location: 16398 - 18758 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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