Cluster: Rep_254_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_254
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_254_c_0 | Rep_254_c_0_4 | 5830 | 7068 | - | 2.A.23.2.11 |
| CAZyme | Rep_254_c_0 | Rep_254_c_0_5 | 7070 | 9385 | - | GT51 |
| CAZyme | Rep_254_c_0 | Rep_254_c_0_6 | 9513 | 11546 | - | GH115 |
| TC | Rep_254_c_0 | Rep_254_c_0_7 | 11699 | 12802 | + | 3.A.1.132.3 |
| TC | Rep_254_c_0 | Rep_254_c_0_8 | 12835 | 14901 | + | 1.B.6.1.1 |
| pfam | Rep_254_c_0 | Rep_254_c_0_9 | 14908 | 19323 | - | TamB |
| pfam | Rep_254_c_0 | Rep_254_c_0_10 | 19507 | 20859 | + | NQRA_N | NQRA_SLBB | NQRA_2nd |
| TC | Rep_254_c_0 | Rep_254_c_0_11 | 20923 | 22086 | + | 3.D.5.1.1 |
Gene ID: Rep_254_c_0_4
Type: TC
Location: 5830 - 7068 (-)
Type: TC
Location: 5830 - 7068 (-)
Gene ID: Rep_254_c_0_5
Type: CAZyme
Location: 7070 - 9385 (-)
Type: CAZyme
Location: 7070 - 9385 (-)
Gene ID: Rep_254_c_0_6
Type: CAZyme
Location: 9513 - 11546 (-)
Type: CAZyme
Location: 9513 - 11546 (-)
Gene ID: Rep_254_c_0_7
Type: TC
Location: 11699 - 12802 (+)
Type: TC
Location: 11699 - 12802 (+)
Gene ID: Rep_254_c_0_8
Type: TC
Location: 12835 - 14901 (+)
Type: TC
Location: 12835 - 14901 (+)
Gene ID: Rep_254_c_0_9
Type: pfam
Location: 14908 - 19323 (-)
Type: pfam
Location: 14908 - 19323 (-)
Gene ID: Rep_254_c_0_10
Type: pfam
Location: 19507 - 20859 (+)
Type: pfam
Location: 19507 - 20859 (+)
Gene ID: Rep_254_c_0_11
Type: TC
Location: 20923 - 22086 (+)
Type: TC
Location: 20923 - 22086 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.