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Cluster: Rep_252_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_252_c_2 Rep_252_c_2_19 22347 24593 + GH92
NULL(UNKNOWN) Rep_252_c_2 Rep_252_c_2_20 24761 26569 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_252_c_2 Rep_252_c_2_21 26666 29815 + 1.B.14.6.1
pfam Rep_252_c_2 Rep_252_c_2_22 29830 31536 + SusD_RagB | SusD-like_3
pfam Rep_252_c_2 Rep_252_c_2_23 31752 32780 + DUF5017
CAZyme Rep_252_c_2 Rep_252_c_2_24 32855 34747 + GH93
CAZyme Rep_252_c_2 Rep_252_c_2_25 34761 37163 + GH43_31
pfam Rep_252_c_2 Rep_252_c_2_26 37204 38202 + Glyco_hydro_2 | Glyco_hydro_2_C | Glyco_hydro_2_C
CAZyme Rep_252_c_2 Rep_252_c_2_27 38450 40990 + CBM66 | CBM66 | GH43_32
Gene ID: Rep_252_c_2_19
Type: CAZyme
Location: 22347 - 24593 (+)
Gene ID: Rep_252_c_2_20
Type:
Location: 24761 - 26569 (+)
Gene ID: Rep_252_c_2_21
Type: TC
Location: 26666 - 29815 (+)
Gene ID: Rep_252_c_2_22
Type: pfam
Location: 29830 - 31536 (+)
Gene ID: Rep_252_c_2_23
Type: pfam
Location: 31752 - 32780 (+)
Gene ID: Rep_252_c_2_24
Type: CAZyme
Location: 32855 - 34747 (+)
Gene ID: Rep_252_c_2_25
Type: CAZyme
Location: 34761 - 37163 (+)
Gene ID: Rep_252_c_2_26
Type: pfam
Location: 37204 - 38202 (+)
Gene ID: Rep_252_c_2_27
Type: CAZyme
Location: 38450 - 40990 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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