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Cluster: Rep_247_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_247_c_5 Rep_247_c_5_1 2 1423 + GH27
CAZyme Rep_247_c_5 Rep_247_c_5_2 1479 4385 + GH78
peptidase Rep_247_c_5 Rep_247_c_5_3 4405 6633 + S09.UPW
TF Rep_247_c_5 Rep_247_c_5_4 6630 10859 - HTH_AraC
CAZyme Rep_247_c_5 Rep_247_c_5_5 11121 14093 - GH2
pfam Rep_247_c_5 Rep_247_c_5_6 14347 16104 - SusD_RagB | SusD-like_3
TC Rep_247_c_5 Rep_247_c_5_7 16170 18977 - 1.B.14.6.1
pfam Rep_247_c_5 Rep_247_c_5_8 19034 21058 - SusD_RagB | SusD-like_3
TC Rep_247_c_5 Rep_247_c_5_9 21103 24288 - 1.B.14.6.1
CAZyme Rep_247_c_5 Rep_247_c_5_10 24597 27995 + CE4 | GH18 | GT2
Gene ID: Rep_247_c_5_1
Type: CAZyme
Location: 2 - 1423 (+)
Gene ID: Rep_247_c_5_2
Type: CAZyme
Location: 1479 - 4385 (+)
Gene ID: Rep_247_c_5_3
Type: peptidase
Location: 4405 - 6633 (+)
Gene ID: Rep_247_c_5_4
Type: TF
Location: 6630 - 10859 (-)
Gene ID: Rep_247_c_5_5
Type: CAZyme
Location: 11121 - 14093 (-)
Gene ID: Rep_247_c_5_6
Type: pfam
Location: 14347 - 16104 (-)
Gene ID: Rep_247_c_5_7
Type: TC
Location: 16170 - 18977 (-)
Gene ID: Rep_247_c_5_8
Type: pfam
Location: 19034 - 21058 (-)
Gene ID: Rep_247_c_5_9
Type: TC
Location: 21103 - 24288 (-)
Gene ID: Rep_247_c_5_10
Type: CAZyme
Location: 24597 - 27995 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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