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Cluster: Rep_247_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_247_c_4 Rep_247_c_4_47 50350 51297 - GT2
CAZyme Rep_247_c_4 Rep_247_c_4_48 51267 52208 - GT2
NULL(UNKNOWN) Rep_247_c_4 Rep_247_c_4_49 52205 52654 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_247_c_4 Rep_247_c_4_50 52936 53973 + adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | KR | GDP_Man_Dehyd
TC Rep_247_c_4 Rep_247_c_4_51 54339 56882 - 3.A.9.1.2
pfam Rep_247_c_4 Rep_247_c_4_52 56972 59959 - PDDEXK_1
TC Rep_247_c_4 Rep_247_c_4_53 60035 61708 - 4.C.1.1.7
Gene ID: Rep_247_c_4_47
Type: CAZyme
Location: 50350 - 51297 (-)
Gene ID: Rep_247_c_4_48
Type: CAZyme
Location: 51267 - 52208 (-)
Gene ID: Rep_247_c_4_49
Type:
Location: 52205 - 52654 (-)
Gene ID: Rep_247_c_4_50
Type: pfam
Location: 52936 - 53973 (+)
Gene ID: Rep_247_c_4_51
Type: TC
Location: 54339 - 56882 (-)
Gene ID: Rep_247_c_4_52
Type: pfam
Location: 56972 - 59959 (-)
Gene ID: Rep_247_c_4_53
Type: TC
Location: 60035 - 61708 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_247_c_4_50 vegetarian > vegan 1.01864 0.04619

🧭 Explore Read Mapping of CGC

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