Cluster: Rep_247_CGC5
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_247
- CGC Family ID: CGCFAM_01143
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_247_c_3 | Rep_247_c_3_2 | 2807 | 5953 | + | 1.B.14.6.1 |
| pfam | Rep_247_c_3 | Rep_247_c_3_3 | 5970 | 7709 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_247_c_3 | Rep_247_c_3_4 | 7703 | 9100 | + | DUF4960 | DUF5018 |
| CAZyme | Rep_247_c_3 | Rep_247_c_3_5 | 9112 | 10701 | + | GH32 |
| CAZyme | Rep_247_c_3 | Rep_247_c_3_6 | 10716 | 12443 | + | GH32 |
| peptidase | Rep_247_c_3 | Rep_247_c_3_7 | 12557 | 15436 | - | M16.UPW |
| TC | Rep_247_c_3 | Rep_247_c_3_8 | 15636 | 16352 | + | 1.A.14.2.2 |
| pfam | Rep_247_c_3 | Rep_247_c_3_9 | 16690 | 17577 | + | Fic |
| CAZyme | Rep_247_c_3 | Rep_247_c_3_10 | 17649 | 21098 | - | GH92 |
| pfam | Rep_247_c_3 | Rep_247_c_3_11 | 21253 | 21753 | + | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | Rep_247_c_3 | Rep_247_c_3_12 | 21771 | 24209 | - | GH92 |
| pfam | Rep_247_c_3 | Rep_247_c_3_13 | 25337 | 26956 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_247_c_3 | Rep_247_c_3_14 | 26975 | 29968 | - | 1.B.14.6.1 |
| CAZyme | Rep_247_c_3 | Rep_247_c_3_15 | 30047 | 31480 | - | GH28 |
| pfam | Rep_247_c_3 | Rep_247_c_3_16 | 31542 | 32228 | - | RadC | UPF0758_N |
| pfam | Rep_247_c_3 | Rep_247_c_3_17 | 32209 | 33441 | - | Phosphodiest |
| CAZyme | Rep_247_c_3 | Rep_247_c_3_18 | 33484 | 34620 | - | GT2 |
Gene ID: Rep_247_c_3_2
Type: TC
Location: 2807 - 5953 (+)
Type: TC
Location: 2807 - 5953 (+)
Gene ID: Rep_247_c_3_3
Type: pfam
Location: 5970 - 7709 (+)
Type: pfam
Location: 5970 - 7709 (+)
Gene ID: Rep_247_c_3_4
Type: pfam
Location: 7703 - 9100 (+)
Type: pfam
Location: 7703 - 9100 (+)
Gene ID: Rep_247_c_3_5
Type: CAZyme
Location: 9112 - 10701 (+)
Type: CAZyme
Location: 9112 - 10701 (+)
Gene ID: Rep_247_c_3_6
Type: CAZyme
Location: 10716 - 12443 (+)
Type: CAZyme
Location: 10716 - 12443 (+)
Gene ID: Rep_247_c_3_7
Type: peptidase
Location: 12557 - 15436 (-)
Type: peptidase
Location: 12557 - 15436 (-)
Gene ID: Rep_247_c_3_8
Type: TC
Location: 15636 - 16352 (+)
Type: TC
Location: 15636 - 16352 (+)
Gene ID: Rep_247_c_3_9
Type: pfam
Location: 16690 - 17577 (+)
Type: pfam
Location: 16690 - 17577 (+)
Gene ID: Rep_247_c_3_10
Type: CAZyme
Location: 17649 - 21098 (-)
Type: CAZyme
Location: 17649 - 21098 (-)
Gene ID: Rep_247_c_3_11
Type: pfam
Location: 21253 - 21753 (+)
Type: pfam
Location: 21253 - 21753 (+)
Gene ID: Rep_247_c_3_12
Type: CAZyme
Location: 21771 - 24209 (-)
Type: CAZyme
Location: 21771 - 24209 (-)
Gene ID: Rep_247_c_3_13
Type: pfam
Location: 25337 - 26956 (-)
Type: pfam
Location: 25337 - 26956 (-)
Gene ID: Rep_247_c_3_14
Type: TC
Location: 26975 - 29968 (-)
Type: TC
Location: 26975 - 29968 (-)
Gene ID: Rep_247_c_3_15
Type: CAZyme
Location: 30047 - 31480 (-)
Type: CAZyme
Location: 30047 - 31480 (-)
Gene ID: Rep_247_c_3_16
Type: pfam
Location: 31542 - 32228 (-)
Type: pfam
Location: 31542 - 32228 (-)
Gene ID: Rep_247_c_3_17
Type: pfam
Location: 32209 - 33441 (-)
Type: pfam
Location: 32209 - 33441 (-)
Gene ID: Rep_247_c_3_18
Type: CAZyme
Location: 33484 - 34620 (-)
Type: CAZyme
Location: 33484 - 34620 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella mizrahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.