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Cluster: Rep_247_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_247_c_39 Rep_247_c_39_3 1641 2216 - 9.B.18.1.3
TC Rep_247_c_39 Rep_247_c_39_4 2213 3325 - 9.B.146.1.4
pfam Rep_247_c_39 Rep_247_c_39_5 3509 5050 + PDDEXK_9 | AAA-ATPase_like
CAZyme Rep_247_c_39 Rep_247_c_39_6 5047 5802 - GT2
NULL(UNKNOWN) Rep_247_c_39 Rep_247_c_39_7 5836 6165 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_247_c_39 Rep_247_c_39_8 6110 6940 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_247_c_39 Rep_247_c_39_9 6915 8126 - GT4
CAZyme Rep_247_c_39 Rep_247_c_39_10 8131 8925 - CE4
CAZyme Rep_247_c_39 Rep_247_c_39_11 8915 10027 - GT4
Gene ID: Rep_247_c_39_3
Type: TC
Location: 1641 - 2216 (-)
Gene ID: Rep_247_c_39_4
Type: TC
Location: 2213 - 3325 (-)
Gene ID: Rep_247_c_39_5
Type: pfam
Location: 3509 - 5050 (+)
Gene ID: Rep_247_c_39_6
Type: CAZyme
Location: 5047 - 5802 (-)
Gene ID: Rep_247_c_39_7
Type:
Location: 5836 - 6165 (-)
Gene ID: Rep_247_c_39_8
Type:
Location: 6110 - 6940 (-)
Gene ID: Rep_247_c_39_9
Type: CAZyme
Location: 6915 - 8126 (-)
Gene ID: Rep_247_c_39_10
Type: CAZyme
Location: 8131 - 8925 (-)
Gene ID: Rep_247_c_39_11
Type: CAZyme
Location: 8915 - 10027 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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