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Cluster: Rep_247_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_247_c_38 Rep_247_c_38_5 3300 4772 - 3.D.1.2.1
TC Rep_247_c_38 Rep_247_c_38_6 4797 6320 - 3.D.1.5.1
TC Rep_247_c_38 Rep_247_c_38_7 6357 8318 - 3.D.9.1.1
TC Rep_247_c_38 Rep_247_c_38_8 8326 8634 - 3.D.9.1.1
TC Rep_247_c_38 Rep_247_c_38_9 8631 9152 - 3.D.9.1.1
STP Rep_247_c_38 Rep_247_c_38_10 9158 9727 - Fer4 | Fer4
TC Rep_247_c_38 Rep_247_c_38_11 9741 10826 - 3.D.1.5.1
TC Rep_247_c_38 Rep_247_c_38_12 10950 12527 - 3.D.1.5.1
TC Rep_247_c_38 Rep_247_c_38_13 12543 13358 - 3.D.1.6.1
TC Rep_247_c_38 Rep_247_c_38_14 13349 13699 - 3.D.1.8.1
NULL(UNKNOWN) Rep_247_c_38 Rep_247_c_38_15 14448 14633 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_247_c_38 Rep_247_c_38_16 14789 18865 - HTH_AraC
TC Rep_247_c_38 Rep_247_c_38_17 19057 22362 + 1.B.14.6.1
pfam Rep_247_c_38 Rep_247_c_38_18 22374 24368 + SusD_RagB | SusD-like_3
CAZyme Rep_247_c_38 Rep_247_c_38_19 24607 25734 + GH43_24
NULL(UNKNOWN) Rep_247_c_38 Rep_247_c_38_20 25863 26027 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_247_c_38 Rep_247_c_38_21 26171 28630 - GH31_4
NULL(UNKNOWN) Rep_247_c_38 Rep_247_c_38_22 29057 30055 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_247_c_38 Rep_247_c_38_23 30135 31889 - 8.A.46.2.2
TC Rep_247_c_38 Rep_247_c_38_24 31939 35118 - 1.B.14.6.2
Gene ID: Rep_247_c_38_5
Type: TC
Location: 3300 - 4772 (-)
Gene ID: Rep_247_c_38_6
Type: TC
Location: 4797 - 6320 (-)
Gene ID: Rep_247_c_38_7
Type: TC
Location: 6357 - 8318 (-)
Gene ID: Rep_247_c_38_8
Type: TC
Location: 8326 - 8634 (-)
Gene ID: Rep_247_c_38_9
Type: TC
Location: 8631 - 9152 (-)
Gene ID: Rep_247_c_38_10
Type: STP
Location: 9158 - 9727 (-)
Gene ID: Rep_247_c_38_11
Type: TC
Location: 9741 - 10826 (-)
Gene ID: Rep_247_c_38_12
Type: TC
Location: 10950 - 12527 (-)
Gene ID: Rep_247_c_38_13
Type: TC
Location: 12543 - 13358 (-)
Gene ID: Rep_247_c_38_14
Type: TC
Location: 13349 - 13699 (-)
Gene ID: Rep_247_c_38_15
Type:
Location: 14448 - 14633 (+)
Gene ID: Rep_247_c_38_16
Type: TF
Location: 14789 - 18865 (-)
Gene ID: Rep_247_c_38_17
Type: TC
Location: 19057 - 22362 (+)
Gene ID: Rep_247_c_38_18
Type: pfam
Location: 22374 - 24368 (+)
Gene ID: Rep_247_c_38_19
Type: CAZyme
Location: 24607 - 25734 (+)
Gene ID: Rep_247_c_38_20
Type:
Location: 25863 - 26027 (+)
Gene ID: Rep_247_c_38_21
Type: CAZyme
Location: 26171 - 28630 (-)
Gene ID: Rep_247_c_38_22
Type:
Location: 29057 - 30055 (-)
Gene ID: Rep_247_c_38_23
Type: TC
Location: 30135 - 31889 (-)
Gene ID: Rep_247_c_38_24
Type: TC
Location: 31939 - 35118 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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