Cluster: Rep_247_CGC38
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate: xylan/beta-glucan
- Genome ID: Rep_247
- CGC Family ID: CGCFAM_00116
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_247_c_37 | Rep_247_c_37_10 | 12152 | 15322 | - | 1.B.14.6.1 |
| pfam | Rep_247_c_37 | Rep_247_c_37_11 | 15650 | 16459 | + | S6PP | Hydrolase_3 |
| CAZyme | Rep_247_c_37 | Rep_247_c_37_12 | 17233 | 18876 | - | GH29 |
| NULL(UNKNOWN) | Rep_247_c_37 | Rep_247_c_37_13 | 18928 | 19032 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_247_c_37 | Rep_247_c_37_14 | 19159 | 20166 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_247_c_37 | Rep_247_c_37_15 | 20374 | 23367 | - | GH98 |
| CAZyme | Rep_247_c_37 | Rep_247_c_37_16 | 23545 | 25245 | - | GH10 |
| pfam | Rep_247_c_37 | Rep_247_c_37_17 | 25359 | 26342 | - | BT_3987-like_N | DUF5627 |
| pfam | Rep_247_c_37 | Rep_247_c_37_18 | 26495 | 28267 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_247_c_37 | Rep_247_c_37_19 | 28291 | 31110 | - | 1.B.14.6.1 |
| pfam | Rep_247_c_37 | Rep_247_c_37_20 | 31156 | 33033 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_247_c_37 | Rep_247_c_37_21 | 33081 | 36173 | - | 1.B.14.6.1 |
Gene ID: Rep_247_c_37_10
Type: TC
Location: 12152 - 15322 (-)
Type: TC
Location: 12152 - 15322 (-)
Gene ID: Rep_247_c_37_11
Type: pfam
Location: 15650 - 16459 (+)
Type: pfam
Location: 15650 - 16459 (+)
Gene ID: Rep_247_c_37_12
Type: CAZyme
Location: 17233 - 18876 (-)
Type: CAZyme
Location: 17233 - 18876 (-)
Gene ID: Rep_247_c_37_13
Type:
Location: 18928 - 19032 (-)
Type:
Location: 18928 - 19032 (-)
Gene ID: Rep_247_c_37_14
Type:
Location: 19159 - 20166 (-)
Type:
Location: 19159 - 20166 (-)
Gene ID: Rep_247_c_37_15
Type: CAZyme
Location: 20374 - 23367 (-)
Type: CAZyme
Location: 20374 - 23367 (-)
Gene ID: Rep_247_c_37_16
Type: CAZyme
Location: 23545 - 25245 (-)
Type: CAZyme
Location: 23545 - 25245 (-)
Gene ID: Rep_247_c_37_17
Type: pfam
Location: 25359 - 26342 (-)
Type: pfam
Location: 25359 - 26342 (-)
Gene ID: Rep_247_c_37_18
Type: pfam
Location: 26495 - 28267 (-)
Type: pfam
Location: 26495 - 28267 (-)
Gene ID: Rep_247_c_37_19
Type: TC
Location: 28291 - 31110 (-)
Type: TC
Location: 28291 - 31110 (-)
Gene ID: Rep_247_c_37_20
Type: pfam
Location: 31156 - 33033 (-)
Type: pfam
Location: 31156 - 33033 (-)
Gene ID: Rep_247_c_37_21
Type: TC
Location: 33081 - 36173 (-)
Type: TC
Location: 33081 - 36173 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella mizrahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.