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Cluster: Rep_2477_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2477_c_20 Rep_2477_c_20_1 2 1354 + 2.A.66.1.12
CAZyme Rep_2477_c_20 Rep_2477_c_20_2 1425 2297 + CE4
pfam Rep_2477_c_20 Rep_2477_c_20_3 2467 2742 + Trns_repr_metal
TC Rep_2477_c_20 Rep_2477_c_20_4 2954 4822 + 3.A.3.6.16
NULL(UNKNOWN) Rep_2477_c_20 Rep_2477_c_20_5 4826 5002 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2477_c_20 Rep_2477_c_20_6 5184 6035 - 8.A.5.1.4
TC Rep_2477_c_20 Rep_2477_c_20_7 6187 7530 - 1.A.26.1.2
NULL(UNKNOWN) Rep_2477_c_20 Rep_2477_c_20_8 7865 8914 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2477_c_20 Rep_2477_c_20_9 8917 10278 - 2.A.2.3.4
pfam Rep_2477_c_20 Rep_2477_c_20_10 10386 13511 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | DUF5915
CAZyme Rep_2477_c_20 Rep_2477_c_20_11 13968 15356 + CE4
Gene ID: Rep_2477_c_20_1
Type: TC
Location: 2 - 1354 (+)
Gene ID: Rep_2477_c_20_2
Type: CAZyme
Location: 1425 - 2297 (+)
Gene ID: Rep_2477_c_20_3
Type: pfam
Location: 2467 - 2742 (+)
Gene ID: Rep_2477_c_20_4
Type: TC
Location: 2954 - 4822 (+)
Gene ID: Rep_2477_c_20_5
Type:
Location: 4826 - 5002 (+)
Gene ID: Rep_2477_c_20_6
Type: TC
Location: 5184 - 6035 (-)
Gene ID: Rep_2477_c_20_7
Type: TC
Location: 6187 - 7530 (-)
Gene ID: Rep_2477_c_20_8
Type:
Location: 7865 - 8914 (-)
Gene ID: Rep_2477_c_20_9
Type: TC
Location: 8917 - 10278 (-)
Gene ID: Rep_2477_c_20_10
Type: pfam
Location: 10386 - 13511 (-)
Gene ID: Rep_2477_c_20_11
Type: CAZyme
Location: 13968 - 15356 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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