Cluster: Rep_2406_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2406
- CGC Family ID: CGCFAM_08953
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2406_c_88 | Rep_2406_c_88_3 | 2506 | 3381 | - | 2.A.115.1.1 |
| CAZyme | Rep_2406_c_88 | Rep_2406_c_88_4 | 3572 | 5890 | - | GH31_3 |
| pfam | Rep_2406_c_88 | Rep_2406_c_88_5 | 6098 | 7399 | - | SBP_bac_1 |
| TC | Rep_2406_c_88 | Rep_2406_c_88_6 | 7615 | 8454 | - | 3.A.1.1.45 |
Gene ID: Rep_2406_c_88_3
Type: TC
Location: 2506 - 3381 (-)
Type: TC
Location: 2506 - 3381 (-)
Gene ID: Rep_2406_c_88_4
Type: CAZyme
Location: 3572 - 5890 (-)
Type: CAZyme
Location: 3572 - 5890 (-)
Gene ID: Rep_2406_c_88_5
Type: pfam
Location: 6098 - 7399 (-)
Type: pfam
Location: 6098 - 7399 (-)
Gene ID: Rep_2406_c_88_6
Type: TC
Location: 7615 - 8454 (-)
Type: TC
Location: 7615 - 8454 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Porcincola
Species
Porcincola sp902800805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.