Cluster: Rep_2406_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2406
- CGC Family ID: CGCFAM_01087
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2406_c_56 | Rep_2406_c_56_1 | 1 | 894 | + | 3.A.1.104.1 |
| TC | Rep_2406_c_56 | Rep_2406_c_56_2 | 902 | 2140 | + | 3.A.1.103.1 |
| CAZyme | Rep_2406_c_56 | Rep_2406_c_56_3 | 2271 | 6503 | + | GT2 | GT2 | GT2 |
| pfam | Rep_2406_c_56 | Rep_2406_c_56_4 | 6527 | 8299 | + | DUF2142 |
| pfam | Rep_2406_c_56 | Rep_2406_c_56_5 | 8321 | 9124 | + | Glycos_transf_2 |
| CAZyme | Rep_2406_c_56 | Rep_2406_c_56_6 | 9140 | 10066 | + | GT2 |
| CAZyme | Rep_2406_c_56 | Rep_2406_c_56_7 | 10079 | 10777 | + | GT2 |
Gene ID: Rep_2406_c_56_1
Type: TC
Location: 1 - 894 (+)
Type: TC
Location: 1 - 894 (+)
Gene ID: Rep_2406_c_56_2
Type: TC
Location: 902 - 2140 (+)
Type: TC
Location: 902 - 2140 (+)
Gene ID: Rep_2406_c_56_3
Type: CAZyme
Location: 2271 - 6503 (+)
Type: CAZyme
Location: 2271 - 6503 (+)
Gene ID: Rep_2406_c_56_4
Type: pfam
Location: 6527 - 8299 (+)
Type: pfam
Location: 6527 - 8299 (+)
Gene ID: Rep_2406_c_56_5
Type: pfam
Location: 8321 - 9124 (+)
Type: pfam
Location: 8321 - 9124 (+)
Gene ID: Rep_2406_c_56_6
Type: CAZyme
Location: 9140 - 10066 (+)
Type: CAZyme
Location: 9140 - 10066 (+)
Gene ID: Rep_2406_c_56_7
Type: CAZyme
Location: 10079 - 10777 (+)
Type: CAZyme
Location: 10079 - 10777 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Porcincola
Species
Porcincola sp902800805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.