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Cluster: Rep_2406_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2406_c_217 Rep_2406_c_217_1 1 588 + 2.A.40.1.4
pfam Rep_2406_c_217 Rep_2406_c_217_2 919 1227 + Thiamine_BP
TC Rep_2406_c_217 Rep_2406_c_217_3 1247 2050 + 3.A.1.17.8
TC Rep_2406_c_217 Rep_2406_c_217_4 2145 3182 + 3.A.1.17.8
TC Rep_2406_c_217 Rep_2406_c_217_5 3345 4103 + 3.A.1.17.13
TF Rep_2406_c_217 Rep_2406_c_217_6 4334 5311 + LacI
pfam Rep_2406_c_217 Rep_2406_c_217_7 5857 7149 + SBP_bac_8
TC Rep_2406_c_217 Rep_2406_c_217_8 7294 8175 + 3.A.1.1.45
TC Rep_2406_c_217 Rep_2406_c_217_9 8175 9035 + 3.A.1.1.45
CAZyme Rep_2406_c_217 Rep_2406_c_217_10 9115 10815 + GH13_4
Gene ID: Rep_2406_c_217_1
Type: TC
Location: 1 - 588 (+)
Gene ID: Rep_2406_c_217_2
Type: pfam
Location: 919 - 1227 (+)
Gene ID: Rep_2406_c_217_3
Type: TC
Location: 1247 - 2050 (+)
Gene ID: Rep_2406_c_217_4
Type: TC
Location: 2145 - 3182 (+)
Gene ID: Rep_2406_c_217_5
Type: TC
Location: 3345 - 4103 (+)
Gene ID: Rep_2406_c_217_6
Type: TF
Location: 4334 - 5311 (+)
Gene ID: Rep_2406_c_217_7
Type: pfam
Location: 5857 - 7149 (+)
Gene ID: Rep_2406_c_217_8
Type: TC
Location: 7294 - 8175 (+)
Gene ID: Rep_2406_c_217_9
Type: TC
Location: 8175 - 9035 (+)
Gene ID: Rep_2406_c_217_10
Type: CAZyme
Location: 9115 - 10815 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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