Cluster: Rep_2406_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2406
- CGC Family ID: CGCFAM_00009
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2406_c_195 | Rep_2406_c_195_9 | 8909 | 10705 | - | GT27 |
| CAZyme | Rep_2406_c_195 | Rep_2406_c_195_10 | 10714 | 12360 | - | GT2 |
| CAZyme | Rep_2406_c_195 | Rep_2406_c_195_11 | 12362 | 15124 | - | GT2 |
| pfam | Rep_2406_c_195 | Rep_2406_c_195_12 | 15121 | 17334 | - | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 |
| TC | Rep_2406_c_195 | Rep_2406_c_195_13 | 17336 | 18544 | - | 3.A.1.103.6 |
Gene ID: Rep_2406_c_195_9
Type: CAZyme
Location: 8909 - 10705 (-)
Type: CAZyme
Location: 8909 - 10705 (-)
Gene ID: Rep_2406_c_195_10
Type: CAZyme
Location: 10714 - 12360 (-)
Type: CAZyme
Location: 10714 - 12360 (-)
Gene ID: Rep_2406_c_195_11
Type: CAZyme
Location: 12362 - 15124 (-)
Type: CAZyme
Location: 12362 - 15124 (-)
Gene ID: Rep_2406_c_195_12
Type: pfam
Location: 15121 - 17334 (-)
Type: pfam
Location: 15121 - 17334 (-)
Gene ID: Rep_2406_c_195_13
Type: TC
Location: 17336 - 18544 (-)
Type: TC
Location: 17336 - 18544 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Porcincola
Species
Porcincola sp902800805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.