Cluster: Rep_2406_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2406
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2406_c_193 | Rep_2406_c_193_7 | 5957 | 7144 | + | 3.A.1.4.10 |
| TC | Rep_2406_c_193 | Rep_2406_c_193_8 | 7234 | 8115 | + | 3.A.1.4.10 |
| TC | Rep_2406_c_193 | Rep_2406_c_193_9 | 8125 | 9210 | + | 3.A.1.4.8 |
| TC | Rep_2406_c_193 | Rep_2406_c_193_10 | 9217 | 9987 | + | 3.A.1.4.10 |
| TC | Rep_2406_c_193 | Rep_2406_c_193_11 | 9987 | 10712 | + | 3.A.1.4.10 |
| pfam | Rep_2406_c_193 | Rep_2406_c_193_12 | 10943 | 12151 | + | GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | ATP-grasp_4 | LAL_C2 |
| CAZyme | Rep_2406_c_193 | Rep_2406_c_193_13 | 12160 | 13116 | + | GT2 |
Gene ID: Rep_2406_c_193_7
Type: TC
Location: 5957 - 7144 (+)
Type: TC
Location: 5957 - 7144 (+)
Gene ID: Rep_2406_c_193_8
Type: TC
Location: 7234 - 8115 (+)
Type: TC
Location: 7234 - 8115 (+)
Gene ID: Rep_2406_c_193_9
Type: TC
Location: 8125 - 9210 (+)
Type: TC
Location: 8125 - 9210 (+)
Gene ID: Rep_2406_c_193_10
Type: TC
Location: 9217 - 9987 (+)
Type: TC
Location: 9217 - 9987 (+)
Gene ID: Rep_2406_c_193_11
Type: TC
Location: 9987 - 10712 (+)
Type: TC
Location: 9987 - 10712 (+)
Gene ID: Rep_2406_c_193_12
Type: pfam
Location: 10943 - 12151 (+)
Type: pfam
Location: 10943 - 12151 (+)
Gene ID: Rep_2406_c_193_13
Type: CAZyme
Location: 12160 - 13116 (+)
Type: CAZyme
Location: 12160 - 13116 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Porcincola
Species
Porcincola sp902800805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.