Cluster: Rep_2406_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2406
- CGC Family ID: CGCFAM_00190
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2406_c_144 | Rep_2406_c_144_3 | 2443 | 3969 | + | 3.A.1.2.12 |
| TC | Rep_2406_c_144 | Rep_2406_c_144_4 | 3966 | 5060 | + | 3.A.1.2.10 |
| TC | Rep_2406_c_144 | Rep_2406_c_144_5 | 5061 | 6059 | + | 3.A.1.2.17 |
| CAZyme | Rep_2406_c_144 | Rep_2406_c_144_6 | 6441 | 7973 | + | GH13_20 |
Gene ID: Rep_2406_c_144_3
Type: TC
Location: 2443 - 3969 (+)
Type: TC
Location: 2443 - 3969 (+)
Gene ID: Rep_2406_c_144_4
Type: TC
Location: 3966 - 5060 (+)
Type: TC
Location: 3966 - 5060 (+)
Gene ID: Rep_2406_c_144_5
Type: TC
Location: 5061 - 6059 (+)
Type: TC
Location: 5061 - 6059 (+)
Gene ID: Rep_2406_c_144_6
Type: CAZyme
Location: 6441 - 7973 (+)
Type: CAZyme
Location: 6441 - 7973 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Porcincola
Species
Porcincola sp902800805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.