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Cluster: Rep_2406_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2406_c_141 Rep_2406_c_141_10 10288 11121 - 3.A.1.1.28
TC Rep_2406_c_141 Rep_2406_c_141_11 11118 11975 - 3.A.1.1.25
STP Rep_2406_c_141 Rep_2406_c_141_12 11995 13296 - SBP_bac_1
TF Rep_2406_c_141 Rep_2406_c_141_13 13440 15056 - HTH_AraC
TC Rep_2406_c_141 Rep_2406_c_141_14 15117 16808 - 8.A.59.2.1
CAZyme Rep_2406_c_141 Rep_2406_c_141_15 16999 19014 - GH127
TF Rep_2406_c_141 Rep_2406_c_141_16 19135 20256 - LacI
TC Rep_2406_c_141 Rep_2406_c_141_17 20360 21208 - 3.A.1.1.11
TC Rep_2406_c_141 Rep_2406_c_141_18 21223 22119 - 3.A.1.1.11
Gene ID: Rep_2406_c_141_10
Type: TC
Location: 10288 - 11121 (-)
Gene ID: Rep_2406_c_141_11
Type: TC
Location: 11118 - 11975 (-)
Gene ID: Rep_2406_c_141_12
Type: STP
Location: 11995 - 13296 (-)
Gene ID: Rep_2406_c_141_13
Type: TF
Location: 13440 - 15056 (-)
Gene ID: Rep_2406_c_141_14
Type: TC
Location: 15117 - 16808 (-)
Gene ID: Rep_2406_c_141_15
Type: CAZyme
Location: 16999 - 19014 (-)
Gene ID: Rep_2406_c_141_16
Type: TF
Location: 19135 - 20256 (-)
Gene ID: Rep_2406_c_141_17
Type: TC
Location: 20360 - 21208 (-)
Gene ID: Rep_2406_c_141_18
Type: TC
Location: 21223 - 22119 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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