Cluster: Rep_2406_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2406
- CGC Family ID: CGCFAM_01395
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2406_c_109 | Rep_2406_c_109_21 | 20146 | 23151 | + | 9.B.34.1.3 |
| CAZyme | Rep_2406_c_109 | Rep_2406_c_109_22 | 23165 | 24838 | - | GH13_31 |
| TF | Rep_2406_c_109 | Rep_2406_c_109_23 | 24854 | 25792 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2406_c_109 | Rep_2406_c_109_24 | 25839 | 27530 | - | GH13_31 |
Gene ID: Rep_2406_c_109_21
Type: TC
Location: 20146 - 23151 (+)
Type: TC
Location: 20146 - 23151 (+)
Gene ID: Rep_2406_c_109_22
Type: CAZyme
Location: 23165 - 24838 (-)
Type: CAZyme
Location: 23165 - 24838 (-)
Gene ID: Rep_2406_c_109_23
Type: TF
Location: 24854 - 25792 (-)
Type: TF
Location: 24854 - 25792 (-)
Gene ID: Rep_2406_c_109_24
Type: CAZyme
Location: 25839 - 27530 (-)
Type: CAZyme
Location: 25839 - 27530 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Porcincola
Species
Porcincola sp902800805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.