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Cluster: Rep_2406_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2406_c_99 Rep_2406_c_99_5 2226 4058 + GH13_11
pfam Rep_2406_c_99 Rep_2406_c_99_6 4091 4846 + DUF5662
TF Rep_2406_c_99 Rep_2406_c_99_7 4765 5712 - HTH_1
TC Rep_2406_c_99 Rep_2406_c_99_8 5981 7003 + 3.A.1.24.2
TC Rep_2406_c_99 Rep_2406_c_99_9 7003 7668 + 3.A.1.24.5
TC Rep_2406_c_99 Rep_2406_c_99_10 7862 8761 + 3.A.1.24.5
STP Rep_2406_c_99 Rep_2406_c_99_11 8925 9503 - TetR_N
pfam Rep_2406_c_99 Rep_2406_c_99_12 9652 10650 - PseudoU_synth_2
TC Rep_2406_c_99 Rep_2406_c_99_13 10825 12045 - 3.A.1.11.7
TC Rep_2406_c_99 Rep_2406_c_99_14 12068 12883 - 3.A.1.11.1
TC Rep_2406_c_99 Rep_2406_c_99_15 12880 13707 - 3.A.1.11.1
TC Rep_2406_c_99 Rep_2406_c_99_16 13771 14910 - 3.A.1.11.8
Gene ID: Rep_2406_c_99_5
Type: CAZyme
Location: 2226 - 4058 (+)
Gene ID: Rep_2406_c_99_6
Type: pfam
Location: 4091 - 4846 (+)
Gene ID: Rep_2406_c_99_7
Type: TF
Location: 4765 - 5712 (-)
Gene ID: Rep_2406_c_99_8
Type: TC
Location: 5981 - 7003 (+)
Gene ID: Rep_2406_c_99_9
Type: TC
Location: 7003 - 7668 (+)
Gene ID: Rep_2406_c_99_10
Type: TC
Location: 7862 - 8761 (+)
Gene ID: Rep_2406_c_99_11
Type: STP
Location: 8925 - 9503 (-)
Gene ID: Rep_2406_c_99_12
Type: pfam
Location: 9652 - 10650 (-)
Gene ID: Rep_2406_c_99_13
Type: TC
Location: 10825 - 12045 (-)
Gene ID: Rep_2406_c_99_14
Type: TC
Location: 12068 - 12883 (-)
Gene ID: Rep_2406_c_99_15
Type: TC
Location: 12880 - 13707 (-)
Gene ID: Rep_2406_c_99_16
Type: TC
Location: 13771 - 14910 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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