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Cluster: Rep_2406_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2406_c_12 Rep_2406_c_12_2 1800 2699 + 3.A.1.1.33
TC Rep_2406_c_12 Rep_2406_c_12_3 2704 3552 + 3.A.1.1.44
TC Rep_2406_c_12 Rep_2406_c_12_4 3562 5373 + 8.A.59.2.1
STP Rep_2406_c_12 Rep_2406_c_12_5 5540 6736 + SBP_bac_1
CAZyme Rep_2406_c_12 Rep_2406_c_12_6 6880 8847 + GH127
CAZyme Rep_2406_c_12 Rep_2406_c_12_7 8879 10945 + GH31_4
pfam Rep_2406_c_12 Rep_2406_c_12_8 11161 11346 + DUF6040
pfam Rep_2406_c_12 Rep_2406_c_12_9 11472 12221 + ADH_zinc_N | ADH_zinc_N_2
TC Rep_2406_c_12 Rep_2406_c_12_10 12353 13198 + 3.A.1.122.14
Gene ID: Rep_2406_c_12_2
Type: TC
Location: 1800 - 2699 (+)
Gene ID: Rep_2406_c_12_3
Type: TC
Location: 2704 - 3552 (+)
Gene ID: Rep_2406_c_12_4
Type: TC
Location: 3562 - 5373 (+)
Gene ID: Rep_2406_c_12_5
Type: STP
Location: 5540 - 6736 (+)
Gene ID: Rep_2406_c_12_6
Type: CAZyme
Location: 6880 - 8847 (+)
Gene ID: Rep_2406_c_12_7
Type: CAZyme
Location: 8879 - 10945 (+)
Gene ID: Rep_2406_c_12_8
Type: pfam
Location: 11161 - 11346 (+)
Gene ID: Rep_2406_c_12_9
Type: pfam
Location: 11472 - 12221 (+)
Gene ID: Rep_2406_c_12_10
Type: TC
Location: 12353 - 13198 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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