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Cluster: Rep_2393_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2393_c_0 Rep_2393_c_0_1901 2133239 2136601 + GH59
pfam Rep_2393_c_0 Rep_2393_c_0_1902 2136703 2137908 + FtsX
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1903 2137905 2139185 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2393_c_0 Rep_2393_c_0_1904 2139185 2139862 + 3.A.1.122.2
TC Rep_2393_c_0 Rep_2393_c_0_1905 2139855 2142050 + 3.A.1.122.14
TC Rep_2393_c_0 Rep_2393_c_0_1906 2142063 2144528 + 3.A.1.122.3
TF Rep_2393_c_0 Rep_2393_c_0_1907 2144647 2145090 + MarR
TC Rep_2393_c_0 Rep_2393_c_0_1908 2145087 2145926 + 2.A.115.2.14
TC Rep_2393_c_0 Rep_2393_c_0_1909 2145977 2146315 + 2.A.115.2.14
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1910 2146776 2147150 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2393_c_0 Rep_2393_c_0_1911 2147237 2150215 + FtsX | FtsX
TC Rep_2393_c_0 Rep_2393_c_0_1912 2150267 2150935 + 3.A.1.125.3
Gene ID: Rep_2393_c_0_1901
Type: CAZyme
Location: 2133239 - 2136601 (+)
Gene ID: Rep_2393_c_0_1902
Type: pfam
Location: 2136703 - 2137908 (+)
Gene ID: Rep_2393_c_0_1903
Type:
Location: 2137905 - 2139185 (+)
Gene ID: Rep_2393_c_0_1904
Type: TC
Location: 2139185 - 2139862 (+)
Gene ID: Rep_2393_c_0_1905
Type: TC
Location: 2139855 - 2142050 (+)
Gene ID: Rep_2393_c_0_1906
Type: TC
Location: 2142063 - 2144528 (+)
Gene ID: Rep_2393_c_0_1907
Type: TF
Location: 2144647 - 2145090 (+)
Gene ID: Rep_2393_c_0_1908
Type: TC
Location: 2145087 - 2145926 (+)
Gene ID: Rep_2393_c_0_1909
Type: TC
Location: 2145977 - 2146315 (+)
Gene ID: Rep_2393_c_0_1910
Type:
Location: 2146776 - 2147150 (+)
Gene ID: Rep_2393_c_0_1911
Type: pfam
Location: 2147237 - 2150215 (+)
Gene ID: Rep_2393_c_0_1912
Type: TC
Location: 2150267 - 2150935 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2393_c_0_1904 vegan > omnivore 1.51953 0.00241

🧭 Explore Read Mapping of CGC

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