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Cluster: Rep_2368_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2368_c_7 Rep_2368_c_7_70 78178 78408 - 3.D.1.6.3
pfam Rep_2368_c_7 Rep_2368_c_7_71 78519 79346 - DegV
NULL(UNKNOWN) Rep_2368_c_7 Rep_2368_c_7_72 79477 80001 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2368_c_7 Rep_2368_c_7_73 80040 81395 - 2.A.66.1.33
NULL(UNKNOWN) Rep_2368_c_7 Rep_2368_c_7_74 81541 82680 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2368_c_7 Rep_2368_c_7_75 83207 84535 + 2.A.66.1.23
CAZyme Rep_2368_c_7 Rep_2368_c_7_76 84662 86200 - PL9
pfam Rep_2368_c_7 Rep_2368_c_7_77 86443 88659 - FtsX | FtsX
TC Rep_2368_c_7 Rep_2368_c_7_78 88709 89407 - 3.A.1.134.7
pfam Rep_2368_c_7 Rep_2368_c_7_79 89591 90712 - Fe-ADH | ADH_Fe_C
TC Rep_2368_c_7 Rep_2368_c_7_80 90717 92819 - 2.A.3.6.1
Gene ID: Rep_2368_c_7_70
Type: TC
Location: 78178 - 78408 (-)
Gene ID: Rep_2368_c_7_71
Type: pfam
Location: 78519 - 79346 (-)
Gene ID: Rep_2368_c_7_72
Type:
Location: 79477 - 80001 (+)
Gene ID: Rep_2368_c_7_73
Type: TC
Location: 80040 - 81395 (-)
Gene ID: Rep_2368_c_7_74
Type:
Location: 81541 - 82680 (-)
Gene ID: Rep_2368_c_7_75
Type: TC
Location: 83207 - 84535 (+)
Gene ID: Rep_2368_c_7_76
Type: CAZyme
Location: 84662 - 86200 (-)
Gene ID: Rep_2368_c_7_77
Type: pfam
Location: 86443 - 88659 (-)
Gene ID: Rep_2368_c_7_78
Type: TC
Location: 88709 - 89407 (-)
Gene ID: Rep_2368_c_7_79
Type: pfam
Location: 89591 - 90712 (-)
Gene ID: Rep_2368_c_7_80
Type: TC
Location: 90717 - 92819 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2368_c_7_74 vegetarian > vegan 1.14126 0.03311

🧭 Explore Read Mapping of CGC

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