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Cluster: Rep_2368_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2368_c_8 Rep_2368_c_8_112 85797 86162 - 2.A.2.5.1
TF Rep_2368_c_8 Rep_2368_c_8_113 86250 86930 + GntR
TC Rep_2368_c_8 Rep_2368_c_8_114 86927 88480 - 3.A.1.120.6
pfam Rep_2368_c_8 Rep_2368_c_8_115 88627 90537 + DUF4012
CAZyme Rep_2368_c_8 Rep_2368_c_8_116 90615 95003 - PL9_1
CAZyme Rep_2368_c_8 Rep_2368_c_8_117 95222 99175 - PL9_1
TC Rep_2368_c_8 Rep_2368_c_8_118 99471 100898 - 9.B.18.1.2
peptidase Rep_2368_c_8 Rep_2368_c_8_119 101118 103562 - C01.UPA
pfam Rep_2368_c_8 Rep_2368_c_8_120 103658 105094 - LytR_cpsA_psr
TC Rep_2368_c_8 Rep_2368_c_8_121 105167 105877 - 8.A.3.2.3
TC Rep_2368_c_8 Rep_2368_c_8_122 105880 106740 - 8.A.3.2.3
Gene ID: Rep_2368_c_8_112
Type: TC
Location: 85797 - 86162 (-)
Gene ID: Rep_2368_c_8_113
Type: TF
Location: 86250 - 86930 (+)
Gene ID: Rep_2368_c_8_114
Type: TC
Location: 86927 - 88480 (-)
Gene ID: Rep_2368_c_8_115
Type: pfam
Location: 88627 - 90537 (+)
Gene ID: Rep_2368_c_8_116
Type: CAZyme
Location: 90615 - 95003 (-)
Gene ID: Rep_2368_c_8_117
Type: CAZyme
Location: 95222 - 99175 (-)
Gene ID: Rep_2368_c_8_118
Type: TC
Location: 99471 - 100898 (-)
Gene ID: Rep_2368_c_8_119
Type: peptidase
Location: 101118 - 103562 (-)
Gene ID: Rep_2368_c_8_120
Type: pfam
Location: 103658 - 105094 (-)
Gene ID: Rep_2368_c_8_121
Type: TC
Location: 105167 - 105877 (-)
Gene ID: Rep_2368_c_8_122
Type: TC
Location: 105880 - 106740 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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