Cluster: Rep_2368_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2368
- CGC Family ID: CGCFAM_01447
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2368_c_7 | Rep_2368_c_7_2106 | 2264601 | 2265242 | - | 8.A.59.4.1 |
| STP | Rep_2368_c_7 | Rep_2368_c_7_2107 | 2265232 | 2266527 | - | EAL |
| CAZyme | Rep_2368_c_7 | Rep_2368_c_7_2108 | 2266803 | 2267480 | - | CE4 |
| pfam | Rep_2368_c_7 | Rep_2368_c_7_2109 | 2267537 | 2268094 | - | Bact_surface_Ig-like |
| TC | Rep_2368_c_7 | Rep_2368_c_7_2110 | 2268185 | 2269831 | - | 3.A.1.123.2 |
| TC | Rep_2368_c_7 | Rep_2368_c_7_2111 | 2269821 | 2271566 | - | 3.A.1.117.1 |
Gene ID: Rep_2368_c_7_2106
Type: TC
Location: 2264601 - 2265242 (-)
Type: TC
Location: 2264601 - 2265242 (-)
Gene ID: Rep_2368_c_7_2107
Type: STP
Location: 2265232 - 2266527 (-)
Type: STP
Location: 2265232 - 2266527 (-)
Gene ID: Rep_2368_c_7_2108
Type: CAZyme
Location: 2266803 - 2267480 (-)
Type: CAZyme
Location: 2266803 - 2267480 (-)
Gene ID: Rep_2368_c_7_2109
Type: pfam
Location: 2267537 - 2268094 (-)
Type: pfam
Location: 2267537 - 2268094 (-)
Gene ID: Rep_2368_c_7_2110
Type: TC
Location: 2268185 - 2269831 (-)
Type: TC
Location: 2268185 - 2269831 (-)
Gene ID: Rep_2368_c_7_2111
Type: TC
Location: 2269821 - 2271566 (-)
Type: TC
Location: 2269821 - 2271566 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira eligens_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2368_c_7_2109 | vegetarian > omnivore | 1.20304 | 0.03098 |