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Cluster: Rep_2368_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2368_c_7 Rep_2368_c_7_39 43120 44640 + 3.A.1.3.15
TC Rep_2368_c_7 Rep_2368_c_7_40 44630 45376 + 3.A.1.3.25
pfam Rep_2368_c_7 Rep_2368_c_7_41 46021 46770 - PseudoU_synth_1 | PseudoU_synth_1
TC Rep_2368_c_7 Rep_2368_c_7_42 46813 48468 - 2.A.16.2.2
STP Rep_2368_c_7 Rep_2368_c_7_43 48472 50013 - GGDEF
TC Rep_2368_c_7 Rep_2368_c_7_44 50234 51283 - 3.A.15.2.1
STP Rep_2368_c_7 Rep_2368_c_7_45 51358 51999 - HhH-GPD
TC Rep_2368_c_7 Rep_2368_c_7_46 52003 53469 - 2.A.22.5.3
TC Rep_2368_c_7 Rep_2368_c_7_47 53543 55243 - 3.A.1.1.9
TC Rep_2368_c_7 Rep_2368_c_7_48 55248 56096 - 3.A.1.1.27
TC Rep_2368_c_7 Rep_2368_c_7_49 56093 57430 - 3.A.1.1.27
pfam Rep_2368_c_7 Rep_2368_c_7_50 57467 58717 - SBP_bac_8
TC Rep_2368_c_7 Rep_2368_c_7_51 58832 60589 - 9.B.33.1.1
TF Rep_2368_c_7 Rep_2368_c_7_52 60586 62130 - HTH_AraC
CAZyme Rep_2368_c_7 Rep_2368_c_7_53 62223 64502 - GT35
Gene ID: Rep_2368_c_7_39
Type: TC
Location: 43120 - 44640 (+)
Gene ID: Rep_2368_c_7_40
Type: TC
Location: 44630 - 45376 (+)
Gene ID: Rep_2368_c_7_41
Type: pfam
Location: 46021 - 46770 (-)
Gene ID: Rep_2368_c_7_42
Type: TC
Location: 46813 - 48468 (-)
Gene ID: Rep_2368_c_7_43
Type: STP
Location: 48472 - 50013 (-)
Gene ID: Rep_2368_c_7_44
Type: TC
Location: 50234 - 51283 (-)
Gene ID: Rep_2368_c_7_45
Type: STP
Location: 51358 - 51999 (-)
Gene ID: Rep_2368_c_7_46
Type: TC
Location: 52003 - 53469 (-)
Gene ID: Rep_2368_c_7_47
Type: TC
Location: 53543 - 55243 (-)
Gene ID: Rep_2368_c_7_48
Type: TC
Location: 55248 - 56096 (-)
Gene ID: Rep_2368_c_7_49
Type: TC
Location: 56093 - 57430 (-)
Gene ID: Rep_2368_c_7_50
Type: pfam
Location: 57467 - 58717 (-)
Gene ID: Rep_2368_c_7_51
Type: TC
Location: 58832 - 60589 (-)
Gene ID: Rep_2368_c_7_52
Type: TF
Location: 60586 - 62130 (-)
Gene ID: Rep_2368_c_7_53
Type: CAZyme
Location: 62223 - 64502 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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