Cluster: Rep_2338_CGC15
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 10
- Substrate: beta-mannan
- Genome ID: Rep_2338
- CGC Family ID: CGCFAM_00226
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_7 | 5506 | 7227 | - | GH2 |
| TF | Rep_2338_c_11 | Rep_2338_c_11_8 | 7543 | 8514 | + | HTH_5 |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_9 | 8504 | 10102 | - | GH13_23 |
| TF | Rep_2338_c_11 | Rep_2338_c_11_10 | 10175 | 11218 | - | LacI |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_11 | 11347 | 13842 | - | GH2 |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_12 | 13842 | 14921 | - | GH130_4 |
| TC | Rep_2338_c_11 | Rep_2338_c_11_13 | 14937 | 15761 | - | 3.A.1.1.46 |
| TC | Rep_2338_c_11 | Rep_2338_c_11_14 | 15777 | 16673 | - | 3.A.1.1.28 |
| NULL(UNKNOWN) | Rep_2338_c_11 | Rep_2338_c_11_15 | 16745 | 18160 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_16 | 18238 | 19182 | - | GT108 |
| NULL(UNKNOWN) | Rep_2338_c_11 | Rep_2338_c_11_17 | 19459 | 20211 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2338_c_11 | Rep_2338_c_11_18 | 20214 | 20831 | - | 9.B.28.1.3 |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_19 | 20856 | 22223 | - | GH1 |
| pfam | Rep_2338_c_11 | Rep_2338_c_11_20 | 22385 | 23326 | - | PMI_typeI_cat | MPI_cupin_dom |
| pfam | Rep_2338_c_11 | Rep_2338_c_11_21 | 23370 | 25091 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_22 | 25122 | 26231 | - | CBM35inCE17 | CE17 |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_23 | 26257 | 27432 | - | GH130_1 |
| pfam | Rep_2338_c_11 | Rep_2338_c_11_24 | 27435 | 28610 | - | GlcNAc_2-epim |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_25 | 28627 | 29649 | - | GH130_2 |
| CAZyme | Rep_2338_c_11 | Rep_2338_c_11_26 | 29704 | 30726 | - | CE2 |
Gene ID: Rep_2338_c_11_7
Type: CAZyme
Location: 5506 - 7227 (-)
Type: CAZyme
Location: 5506 - 7227 (-)
Gene ID: Rep_2338_c_11_8
Type: TF
Location: 7543 - 8514 (+)
Type: TF
Location: 7543 - 8514 (+)
Gene ID: Rep_2338_c_11_9
Type: CAZyme
Location: 8504 - 10102 (-)
Type: CAZyme
Location: 8504 - 10102 (-)
Gene ID: Rep_2338_c_11_10
Type: TF
Location: 10175 - 11218 (-)
Type: TF
Location: 10175 - 11218 (-)
Gene ID: Rep_2338_c_11_11
Type: CAZyme
Location: 11347 - 13842 (-)
Type: CAZyme
Location: 11347 - 13842 (-)
Gene ID: Rep_2338_c_11_12
Type: CAZyme
Location: 13842 - 14921 (-)
Type: CAZyme
Location: 13842 - 14921 (-)
Gene ID: Rep_2338_c_11_13
Type: TC
Location: 14937 - 15761 (-)
Type: TC
Location: 14937 - 15761 (-)
Gene ID: Rep_2338_c_11_14
Type: TC
Location: 15777 - 16673 (-)
Type: TC
Location: 15777 - 16673 (-)
Gene ID: Rep_2338_c_11_15
Type:
Location: 16745 - 18160 (-)
Type:
Location: 16745 - 18160 (-)
Gene ID: Rep_2338_c_11_16
Type: CAZyme
Location: 18238 - 19182 (-)
Type: CAZyme
Location: 18238 - 19182 (-)
Gene ID: Rep_2338_c_11_17
Type:
Location: 19459 - 20211 (-)
Type:
Location: 19459 - 20211 (-)
Gene ID: Rep_2338_c_11_18
Type: TC
Location: 20214 - 20831 (-)
Type: TC
Location: 20214 - 20831 (-)
Gene ID: Rep_2338_c_11_19
Type: CAZyme
Location: 20856 - 22223 (-)
Type: CAZyme
Location: 20856 - 22223 (-)
Gene ID: Rep_2338_c_11_20
Type: pfam
Location: 22385 - 23326 (-)
Type: pfam
Location: 22385 - 23326 (-)
Gene ID: Rep_2338_c_11_21
Type: pfam
Location: 23370 - 25091 (-)
Type: pfam
Location: 23370 - 25091 (-)
Gene ID: Rep_2338_c_11_22
Type: CAZyme
Location: 25122 - 26231 (-)
Type: CAZyme
Location: 25122 - 26231 (-)
Gene ID: Rep_2338_c_11_23
Type: CAZyme
Location: 26257 - 27432 (-)
Type: CAZyme
Location: 26257 - 27432 (-)
Gene ID: Rep_2338_c_11_24
Type: pfam
Location: 27435 - 28610 (-)
Type: pfam
Location: 27435 - 28610 (-)
Gene ID: Rep_2338_c_11_25
Type: CAZyme
Location: 28627 - 29649 (-)
Type: CAZyme
Location: 28627 - 29649 (-)
Gene ID: Rep_2338_c_11_26
Type: CAZyme
Location: 29704 - 30726 (-)
Type: CAZyme
Location: 29704 - 30726 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Scybalocola
Species
Scybalocola sp902489925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.