Cluster: Rep_231_CGC9
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_03517
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_380 | 477897 | 479336 | + | 2.A.66.2.23 |
| pfam | Rep_231_c_0 | Rep_231_c_0_381 | 479344 | 480537 | + | PGA_cap |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_382 | 480931 | 481857 | + | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_383 | 481890 | 482843 | + | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_384 | 482925 | 483896 | + | GT2 |
| STP | Rep_231_c_0 | Rep_231_c_0_385 | 483896 | 485074 | + | Fer4 |
| pfam | Rep_231_c_0 | Rep_231_c_0_386 | 485065 | 486177 | + | PS_pyruv_trans |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_387 | 486174 | 487130 | + | GT2 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_388 | 487134 | 488624 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_389 | 488621 | 489547 | + | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_390 | 489547 | 490515 | + | GT2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_391 | 490512 | 491501 | + | Glyco_transf_92 | Glyco_tranf_2_4 |
| pfam | Rep_231_c_0 | Rep_231_c_0_392 | 491506 | 492756 | + | EpsG |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_393 | 493130 | 494074 | + | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_394 | 494080 | 495294 | + | GT4 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_395 | 495291 | 496466 | + | GT4 |
Gene ID: Rep_231_c_0_380
Type: TC
Location: 477897 - 479336 (+)
Type: TC
Location: 477897 - 479336 (+)
Gene ID: Rep_231_c_0_381
Type: pfam
Location: 479344 - 480537 (+)
Type: pfam
Location: 479344 - 480537 (+)
Gene ID: Rep_231_c_0_382
Type: CAZyme
Location: 480931 - 481857 (+)
Type: CAZyme
Location: 480931 - 481857 (+)
Gene ID: Rep_231_c_0_383
Type: CAZyme
Location: 481890 - 482843 (+)
Type: CAZyme
Location: 481890 - 482843 (+)
Gene ID: Rep_231_c_0_384
Type: CAZyme
Location: 482925 - 483896 (+)
Type: CAZyme
Location: 482925 - 483896 (+)
Gene ID: Rep_231_c_0_385
Type: STP
Location: 483896 - 485074 (+)
Type: STP
Location: 483896 - 485074 (+)
Gene ID: Rep_231_c_0_386
Type: pfam
Location: 485065 - 486177 (+)
Type: pfam
Location: 485065 - 486177 (+)
Gene ID: Rep_231_c_0_387
Type: CAZyme
Location: 486174 - 487130 (+)
Type: CAZyme
Location: 486174 - 487130 (+)
Gene ID: Rep_231_c_0_388
Type:
Location: 487134 - 488624 (+)
Type:
Location: 487134 - 488624 (+)
Gene ID: Rep_231_c_0_389
Type: CAZyme
Location: 488621 - 489547 (+)
Type: CAZyme
Location: 488621 - 489547 (+)
Gene ID: Rep_231_c_0_390
Type: CAZyme
Location: 489547 - 490515 (+)
Type: CAZyme
Location: 489547 - 490515 (+)
Gene ID: Rep_231_c_0_391
Type: pfam
Location: 490512 - 491501 (+)
Type: pfam
Location: 490512 - 491501 (+)
Gene ID: Rep_231_c_0_392
Type: pfam
Location: 491506 - 492756 (+)
Type: pfam
Location: 491506 - 492756 (+)
Gene ID: Rep_231_c_0_393
Type: CAZyme
Location: 493130 - 494074 (+)
Type: CAZyme
Location: 493130 - 494074 (+)
Gene ID: Rep_231_c_0_394
Type: CAZyme
Location: 494080 - 495294 (+)
Type: CAZyme
Location: 494080 - 495294 (+)
Gene ID: Rep_231_c_0_395
Type: CAZyme
Location: 495291 - 496466 (+)
Type: CAZyme
Location: 495291 - 496466 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.