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Cluster: Rep_231_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_231_c_0 Rep_231_c_0_337 421556 422776 + GH5_4
TC Rep_231_c_0 Rep_231_c_0_338 422805 425981 + 1.B.14.6.2
TC Rep_231_c_0 Rep_231_c_0_339 426041 427816 + 8.A.46.2.2
NULL(UNKNOWN) Rep_231_c_0 Rep_231_c_0_340 427877 428881 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_231_c_0 Rep_231_c_0_341 428934 431252 + GH3
pfam Rep_231_c_0 Rep_231_c_0_342 431445 432758 + RmuC
NULL(UNKNOWN) Rep_231_c_0 Rep_231_c_0_343 432869 433582 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_231_c_0 Rep_231_c_0_344 433889 434713 + 1.B.18.3.3
TC Rep_231_c_0 Rep_231_c_0_345 434725 437235 + 8.A.3.3.4
Gene ID: Rep_231_c_0_337
Type: CAZyme
Location: 421556 - 422776 (+)
Gene ID: Rep_231_c_0_338
Type: TC
Location: 422805 - 425981 (+)
Gene ID: Rep_231_c_0_339
Type: TC
Location: 426041 - 427816 (+)
Gene ID: Rep_231_c_0_340
Type:
Location: 427877 - 428881 (+)
Gene ID: Rep_231_c_0_341
Type: CAZyme
Location: 428934 - 431252 (+)
Gene ID: Rep_231_c_0_342
Type: pfam
Location: 431445 - 432758 (+)
Gene ID: Rep_231_c_0_343
Type:
Location: 432869 - 433582 (+)
Gene ID: Rep_231_c_0_344
Type: TC
Location: 433889 - 434713 (+)
Gene ID: Rep_231_c_0_345
Type: TC
Location: 434725 - 437235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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