Cluster: Rep_231_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_330 | 406311 | 409289 | + | 1.B.14.6.1 |
| pfam | Rep_231_c_0 | Rep_231_c_0_331 | 409302 | 410828 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_332 | 410887 | 412434 | + | GH30_3 |
Gene ID: Rep_231_c_0_330
Type: TC
Location: 406311 - 409289 (+)
Type: TC
Location: 406311 - 409289 (+)
Gene ID: Rep_231_c_0_331
Type: pfam
Location: 409302 - 410828 (+)
Type: pfam
Location: 409302 - 410828 (+)
Gene ID: Rep_231_c_0_332
Type: CAZyme
Location: 410887 - 412434 (+)
Type: CAZyme
Location: 410887 - 412434 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_330 | vegetarian > omnivore | 1.49050 | 0.00290 |
| Rep_231_c_0_331 | vegetarian > omnivore | 1.52977 | 0.00290 |
| Rep_231_c_0_332 | vegetarian > omnivore | 1.51664 | 0.00290 |