Cluster: Rep_231_CGC50
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate: pectin/galactan
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_2879 | 3500587 | 3501951 | + | 2.A.22.5.3 |
| TC | Rep_231_c_0 | Rep_231_c_0_2880 | 3502063 | 3503418 | + | 2.A.22.5.3 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2881 | 3503455 | 3504387 | - | HHH_3 | HHH_3 | HHH_3 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2882 | 3504992 | 3505231 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_2883 | 3505412 | 3508378 | + | 1.B.14.6.1 |
| TC | Rep_231_c_0 | Rep_231_c_0_2884 | 3508397 | 3510040 | + | 8.A.46.1.1 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2885 | 3510053 | 3511444 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2886 | 3511463 | 3512539 | + | GH53 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2887 | 3512630 | 3515086 | + | GH2 |
| TF | Rep_231_c_0 | Rep_231_c_0_2888 | 3515241 | 3518120 | + | HTH_AraC |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2889 | 3518359 | 3518625 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_2890 | 3518840 | 3521776 | + | 1.B.14.6.1 |
Gene ID: Rep_231_c_0_2879
Type: TC
Location: 3500587 - 3501951 (+)
Type: TC
Location: 3500587 - 3501951 (+)
Gene ID: Rep_231_c_0_2880
Type: TC
Location: 3502063 - 3503418 (+)
Type: TC
Location: 3502063 - 3503418 (+)
Gene ID: Rep_231_c_0_2881
Type: pfam
Location: 3503455 - 3504387 (-)
Type: pfam
Location: 3503455 - 3504387 (-)
Gene ID: Rep_231_c_0_2882
Type:
Location: 3504992 - 3505231 (+)
Type:
Location: 3504992 - 3505231 (+)
Gene ID: Rep_231_c_0_2883
Type: TC
Location: 3505412 - 3508378 (+)
Type: TC
Location: 3505412 - 3508378 (+)
Gene ID: Rep_231_c_0_2884
Type: TC
Location: 3508397 - 3510040 (+)
Type: TC
Location: 3508397 - 3510040 (+)
Gene ID: Rep_231_c_0_2885
Type: pfam
Location: 3510053 - 3511444 (+)
Type: pfam
Location: 3510053 - 3511444 (+)
Gene ID: Rep_231_c_0_2886
Type: CAZyme
Location: 3511463 - 3512539 (+)
Type: CAZyme
Location: 3511463 - 3512539 (+)
Gene ID: Rep_231_c_0_2887
Type: CAZyme
Location: 3512630 - 3515086 (+)
Type: CAZyme
Location: 3512630 - 3515086 (+)
Gene ID: Rep_231_c_0_2888
Type: TF
Location: 3515241 - 3518120 (+)
Type: TF
Location: 3515241 - 3518120 (+)
Gene ID: Rep_231_c_0_2889
Type:
Location: 3518359 - 3518625 (-)
Type:
Location: 3518359 - 3518625 (-)
Gene ID: Rep_231_c_0_2890
Type: TC
Location: 3518840 - 3521776 (+)
Type: TC
Location: 3518840 - 3521776 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2883 | vegan > omnivore | 2.11793 | 0.01560 |
| Rep_231_c_0_2883 | vegetarian > omnivore | 2.24672 | 0.00290 |
| Rep_231_c_0_2884 | vegetarian > omnivore | 2.14227 | 0.00290 |
| Rep_231_c_0_2885 | vegan > omnivore | 2.10540 | 0.02769 |
| Rep_231_c_0_2885 | vegetarian > omnivore | 2.32483 | 0.00290 |
| Rep_231_c_0_2890 | vegetarian > vegan | 1.06589 | 0.00951 |