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Cluster: Rep_231_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_231_c_0 Rep_231_c_0_216 279973 281970 + GH97
CAZyme Rep_231_c_0 Rep_231_c_0_217 282093 284204 + GH127
CAZyme Rep_231_c_0 Rep_231_c_0_218 284217 286028 + GH141
CAZyme Rep_231_c_0 Rep_231_c_0_219 286059 289664 + CBM67 | GH78
TC Rep_231_c_0 Rep_231_c_0_220 289771 292287 - 3.A.9.1.2
pfam Rep_231_c_0 Rep_231_c_0_221 292743 293336 + AICARFT_IMPCHas | MGS
TC Rep_231_c_0 Rep_231_c_0_222 293522 294544 + 1.A.33.1.5
Gene ID: Rep_231_c_0_216
Type: CAZyme
Location: 279973 - 281970 (+)
Gene ID: Rep_231_c_0_217
Type: CAZyme
Location: 282093 - 284204 (+)
Gene ID: Rep_231_c_0_218
Type: CAZyme
Location: 284217 - 286028 (+)
Gene ID: Rep_231_c_0_219
Type: CAZyme
Location: 286059 - 289664 (+)
Gene ID: Rep_231_c_0_220
Type: TC
Location: 289771 - 292287 (-)
Gene ID: Rep_231_c_0_221
Type: pfam
Location: 292743 - 293336 (+)
Gene ID: Rep_231_c_0_222
Type: TC
Location: 293522 - 294544 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_231_c_0_216 vegan > omnivore 1.61678 0.02769
Rep_231_c_0_216 vegetarian > omnivore 1.36128 0.00290
Rep_231_c_0_217 vegan > omnivore 2.67878 0.01560
Rep_231_c_0_217 vegetarian > omnivore 1.92597 0.00290
Rep_231_c_0_218 vegan > omnivore 2.93740 0.04749
Rep_231_c_0_218 vegetarian > omnivore 2.76467 0.00290
Rep_231_c_0_219 vegetarian > omnivore 2.47474 0.00290
Rep_231_c_0_221 vegetarian > vegan 1.06006 0.00364

🧭 Explore Read Mapping of CGC

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