Cluster: Rep_231_CGC48
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00044
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_2827 | 3428546 | 3431770 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2828 | 3432353 | 3432673 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2829 | 3432527 | 3434533 | - | GH67 |
| TF | Rep_231_c_0 | Rep_231_c_0_2830 | 3434617 | 3438537 | - | HTH_AraC |
| pfam | Rep_231_c_0 | Rep_231_c_0_2831 | 3438789 | 3439991 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_231_c_0 | Rep_231_c_0_2832 | 3440057 | 3441490 | + | 2.A.2.3.2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2833 | 3441528 | 3442652 | + | GH10 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2834 | 3442699 | 3443661 | + | GH43_1 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2835 | 3443914 | 3445314 | + | DUF5687 |
| TC | Rep_231_c_0 | Rep_231_c_0_2836 | 3445351 | 3446061 | + | 3.A.1.124.5 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2837 | 3446158 | 3446928 | + | Ubie_methyltran | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2838 | 3447188 | 3448183 | - | Fic | Virulence_RhuM |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2839 | 3448596 | 3450947 | + | GH3 |
Gene ID: Rep_231_c_0_2827
Type: TC
Location: 3428546 - 3431770 (-)
Type: TC
Location: 3428546 - 3431770 (-)
Gene ID: Rep_231_c_0_2828
Type:
Location: 3432353 - 3432673 (+)
Type:
Location: 3432353 - 3432673 (+)
Gene ID: Rep_231_c_0_2829
Type: CAZyme
Location: 3432527 - 3434533 (-)
Type: CAZyme
Location: 3432527 - 3434533 (-)
Gene ID: Rep_231_c_0_2830
Type: TF
Location: 3434617 - 3438537 (-)
Type: TF
Location: 3434617 - 3438537 (-)
Gene ID: Rep_231_c_0_2831
Type: pfam
Location: 3438789 - 3439991 (+)
Type: pfam
Location: 3438789 - 3439991 (+)
Gene ID: Rep_231_c_0_2832
Type: TC
Location: 3440057 - 3441490 (+)
Type: TC
Location: 3440057 - 3441490 (+)
Gene ID: Rep_231_c_0_2833
Type: CAZyme
Location: 3441528 - 3442652 (+)
Type: CAZyme
Location: 3441528 - 3442652 (+)
Gene ID: Rep_231_c_0_2834
Type: CAZyme
Location: 3442699 - 3443661 (+)
Type: CAZyme
Location: 3442699 - 3443661 (+)
Gene ID: Rep_231_c_0_2835
Type: pfam
Location: 3443914 - 3445314 (+)
Type: pfam
Location: 3443914 - 3445314 (+)
Gene ID: Rep_231_c_0_2836
Type: TC
Location: 3445351 - 3446061 (+)
Type: TC
Location: 3445351 - 3446061 (+)
Gene ID: Rep_231_c_0_2837
Type: pfam
Location: 3446158 - 3446928 (+)
Type: pfam
Location: 3446158 - 3446928 (+)
Gene ID: Rep_231_c_0_2838
Type: pfam
Location: 3447188 - 3448183 (-)
Type: pfam
Location: 3447188 - 3448183 (-)
Gene ID: Rep_231_c_0_2839
Type: CAZyme
Location: 3448596 - 3450947 (+)
Type: CAZyme
Location: 3448596 - 3450947 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2827 | vegetarian > omnivore | 1.10867 | 0.00290 |
| Rep_231_c_0_2837 | vegetarian > vegan | 1.19967 | 0.00951 |
| Rep_231_c_0_2838 | vegetarian > omnivore | 1.24620 | 0.00290 |
| Rep_231_c_0_2838 | vegetarian > vegan | 1.47111 | 0.00951 |