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Cluster: Rep_231_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_231_c_0 Rep_231_c_0_2737 3305170 3307152 + 3.D.10.1.5
TC Rep_231_c_0 Rep_231_c_0_2738 3307168 3307926 + 3.D.10.1.5
pfam Rep_231_c_0 Rep_231_c_0_2739 3308658 3310256 + Thump_like | PG_1098_Fer
peptidase Rep_231_c_0 Rep_231_c_0_2740 3310418 3311959 - S09.UPW
CAZyme Rep_231_c_0 Rep_231_c_0_2741 3312516 3313853 + CE7
NULL(UNKNOWN) Rep_231_c_0 Rep_231_c_0_2742 3313956 3315170 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_231_c_0 Rep_231_c_0_2743 3315270 3317279 + HATPase_c
TC Rep_231_c_0 Rep_231_c_0_2744 3317418 3319001 + 9.B.174.1.1
TC Rep_231_c_0 Rep_231_c_0_2745 3319123 3320094 - 2.A.28.2.4
Gene ID: Rep_231_c_0_2737
Type: TC
Location: 3305170 - 3307152 (+)
Gene ID: Rep_231_c_0_2738
Type: TC
Location: 3307168 - 3307926 (+)
Gene ID: Rep_231_c_0_2739
Type: pfam
Location: 3308658 - 3310256 (+)
Gene ID: Rep_231_c_0_2740
Type: peptidase
Location: 3310418 - 3311959 (-)
Gene ID: Rep_231_c_0_2741
Type: CAZyme
Location: 3312516 - 3313853 (+)
Gene ID: Rep_231_c_0_2742
Type:
Location: 3313956 - 3315170 (+)
Gene ID: Rep_231_c_0_2743
Type: STP
Location: 3315270 - 3317279 (+)
Gene ID: Rep_231_c_0_2744
Type: TC
Location: 3317418 - 3319001 (+)
Gene ID: Rep_231_c_0_2745
Type: TC
Location: 3319123 - 3320094 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_231_c_0_2742 vegetarian > vegan 1.53132 0.00951

🧭 Explore Read Mapping of CGC

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