Cluster: Rep_231_CGC45
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00186
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2683 | 3242056 | 3242781 | + | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2684 | 3242784 | 3243866 | + | GT4 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2685 | 3244301 | 3245587 | - | DDE_Tnp_1 | DDE_Tnp_1_4 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2686 | 3245725 | 3246840 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2687 | 3246887 | 3247846 | - | GT8 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2688 | 3247925 | 3248896 | + | GT2 |
| peptidase | Rep_231_c_0 | Rep_231_c_0_2689 | 3249219 | 3250220 | - | U32.UPW |
| pfam | Rep_231_c_0 | Rep_231_c_0_2690 | 3251071 | 3252183 | + | RVT_1 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2691 | 3252682 | 3253767 | - | GT9 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2692 | 3253863 | 3254465 | - | DUF4254 |
| TC | Rep_231_c_0 | Rep_231_c_0_2693 | 3254691 | 3254927 | + | 3.D.1.6.3 |
Gene ID: Rep_231_c_0_2683
Type: CAZyme
Location: 3242056 - 3242781 (+)
Type: CAZyme
Location: 3242056 - 3242781 (+)
Gene ID: Rep_231_c_0_2684
Type: CAZyme
Location: 3242784 - 3243866 (+)
Type: CAZyme
Location: 3242784 - 3243866 (+)
Gene ID: Rep_231_c_0_2685
Type: pfam
Location: 3244301 - 3245587 (-)
Type: pfam
Location: 3244301 - 3245587 (-)
Gene ID: Rep_231_c_0_2686
Type:
Location: 3245725 - 3246840 (-)
Type:
Location: 3245725 - 3246840 (-)
Gene ID: Rep_231_c_0_2687
Type: CAZyme
Location: 3246887 - 3247846 (-)
Type: CAZyme
Location: 3246887 - 3247846 (-)
Gene ID: Rep_231_c_0_2688
Type: CAZyme
Location: 3247925 - 3248896 (+)
Type: CAZyme
Location: 3247925 - 3248896 (+)
Gene ID: Rep_231_c_0_2689
Type: peptidase
Location: 3249219 - 3250220 (-)
Type: peptidase
Location: 3249219 - 3250220 (-)
Gene ID: Rep_231_c_0_2690
Type: pfam
Location: 3251071 - 3252183 (+)
Type: pfam
Location: 3251071 - 3252183 (+)
Gene ID: Rep_231_c_0_2691
Type: CAZyme
Location: 3252682 - 3253767 (-)
Type: CAZyme
Location: 3252682 - 3253767 (-)
Gene ID: Rep_231_c_0_2692
Type: pfam
Location: 3253863 - 3254465 (-)
Type: pfam
Location: 3253863 - 3254465 (-)
Gene ID: Rep_231_c_0_2693
Type: TC
Location: 3254691 - 3254927 (+)
Type: TC
Location: 3254691 - 3254927 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2689 | vegetarian > vegan | 1.11165 | 0.00951 |
| Rep_231_c_0_2692 | vegetarian > vegan | 1.05095 | 0.00951 |