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Cluster: Rep_231_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_231_c_0 Rep_231_c_0_2629 3171445 3173160 - 2.A.58.2.2
NULL(UNKNOWN) Rep_231_c_0 Rep_231_c_0_2630 3173380 3173526 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_231_c_0 Rep_231_c_0_2631 3173493 3175790 + S1 | RNB | OB_Dis3 | CSD2
CAZyme Rep_231_c_0 Rep_231_c_0_2632 3181546 3183741 - GH36
TC Rep_231_c_0 Rep_231_c_0_2633 3184069 3184725 + 1.C.113.1.3
TC Rep_231_c_0 Rep_231_c_0_2634 3184963 3185787 + 3.A.1.132.6
NULL(UNKNOWN) Rep_231_c_0 Rep_231_c_0_2635 3185801 3186646 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_231_c_0 Rep_231_c_0_2636 3186666 3187037 + GntR
TC Rep_231_c_0 Rep_231_c_0_2637 3187199 3187915 + 3.A.1.122.14
TC Rep_231_c_0 Rep_231_c_0_2638 3187931 3189190 + 3.A.1.122.2
TC Rep_231_c_0 Rep_231_c_0_2639 3189207 3190454 + 3.A.1.122.1
Gene ID: Rep_231_c_0_2629
Type: TC
Location: 3171445 - 3173160 (-)
Gene ID: Rep_231_c_0_2630
Type:
Location: 3173380 - 3173526 (+)
Gene ID: Rep_231_c_0_2631
Type: pfam
Location: 3173493 - 3175790 (+)
Gene ID: Rep_231_c_0_2632
Type: CAZyme
Location: 3181546 - 3183741 (-)
Gene ID: Rep_231_c_0_2633
Type: TC
Location: 3184069 - 3184725 (+)
Gene ID: Rep_231_c_0_2634
Type: TC
Location: 3184963 - 3185787 (+)
Gene ID: Rep_231_c_0_2635
Type:
Location: 3185801 - 3186646 (+)
Gene ID: Rep_231_c_0_2636
Type: TF
Location: 3186666 - 3187037 (+)
Gene ID: Rep_231_c_0_2637
Type: TC
Location: 3187199 - 3187915 (+)
Gene ID: Rep_231_c_0_2638
Type: TC
Location: 3187931 - 3189190 (+)
Gene ID: Rep_231_c_0_2639
Type: TC
Location: 3189207 - 3190454 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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